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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659855 (9 seq.)
>W1910237807
FPLH01000015
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
450664
450739
+
Val
GAC
[ENA]
¡û
>W1911498521
OCTU01000001
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
249701
249776
+
Val
GAC
[ENA]
¡û
>W2010149637
CAACYI010000001
Bacillota
Anaerococcus prevotii 3012STDY7089603 [CAACYI]
1787789
1787864
+
Val
GAC
[ENA]
¡û
>W2010387016
FPLH01000015
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
450664
450739
+
Val
GAC
[ENA]
¡û
>W2011159425
OCTU01000001
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
249701
249776
+
Val
GAC
[ENA]
¡û
>W1511351184
JRMZ01000036
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
20405
20480
+
Val
GAC
[ENA]
¡û
>W11173962
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
331766
331841
+
Val
GAC
[ENA]
¡û
>W1610095185
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
975752
975827
+
Val
GAC
[ENA]
¡û
>W1710097980
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
975752
975827
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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