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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659861 (89 seq.)
>W1710881422
LMTB01000016
Actinomycetota
Dietzia timorensis [LMTB]
85775
85847
+
Gln
CTG
[ENA]
¡û
>W1711081647
LSSV01000060
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
149
77
-
Gln
CTG
[ENA]
¡û
>W1711082124
LSTQ01000006
Actinomycetota
Corynebacterium stationis [LSTQ]
8786
8714
-
Gln
CTG
[ENA]
¡û
>W1711187709
LWPR01000075
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
885
813
-
Gln
CTG
[ENA]
¡û
>W1711281862
LZMN01000041
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
49889
49817
-
Gln
CTG
[ENA]
¡û
>W1711351244
MDCG01000388
Actinomycetota
Dietzia alimentaria [MDCG]
11199
11271
+
Gln
CTG
[ENA]
¡û
>W1711492365
MKKI01000011
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
169936
169864
-
Gln
CTG
[ENA]
¡û
>C171001849
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
1694101
1694029
-
Gln
CTG
-
¡û
>C171002101
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
1560642
1560570
-
Gln
CTG
-
¡û
>C171002155
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
1613877
1613805
-
Gln
CTG
-
¡û
>C171044560
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
2095104
2095032
-
Gln
CTG
-
¡û
>C171098532
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1780692
1780620
-
Gln
CTG
-
¡û
>C171101865
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
1482670
1482598
-
Gln
CTG
-
¡û
>W131099110
AOSR01000024
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
41509
41437
-
Gln
CTG
[ENA]
¡û
>W131159285
AQUX01000009
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
11789
11717
-
Gln
CTG
[ENA]
¡û
>W131160897
AQXC01000002
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
210622
210694
+
Gln
CTG
[ENA]
¡û
>W131165366
ARBM01000005
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
56165
56093
-
Gln
CTG
[ENA]
¡û
>W131219769
ATYV01000005
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
171903
171977
+
Gln
CTG
[ENA]
¡û
>W131219794
ATYV01000018
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
69908
69834
-
Gln
CTG
[ENA]
¡û
>WENV180228681
OBCD01008337
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
278
350
+
Gln
CTG
[ENA]
¢þ
>WENV180732115
ODGX01000244
[ODGX] human metagenome; G_DNA_Anterior nares
2564
2636
+
Gln
CTG
[ENA]
¢þ
>WENV180838970
ODKH01005705
[ODKH] human metagenome; G_DNA_Anterior nares
350
421
+
Gln
CTG
[ENA]
¢þ
>WENV180875561
ODLS01006329
[ODLS] human metagenome; G_DNA_Anterior nares
120
48
-
Gln
CTG
[ENA]
¢þ
>WENV180916290
ODTC01001915
[ODTC] human metagenome; G_DNA_Anterior nares
143
71
-
Gln
CTG
[ENA]
¢þ
>W141096253
AVFF01000015
Actinomycetota
Corynebacterium pseudodiphtheriticum 90104 [AVFF]
24615
24543
-
Gln
CTG
[ENA]
¡û
>WENV181032254
ODXL01001722
[ODXL] human metagenome; G_DNA_Anterior nares
617
689
+
Gln
CTG
[ENA]
¢þ
>WENV181131538
OEGC01002173
[OEGC] human metagenome; G_DNA_Anterior nares
128
56
-
Gln
CTG
[ENA]
¢þ
>WENV181169544
OEIV010003925
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2991
3063
+
Gln
CTG
[ENA]
¢þ
>W141155044
AXLQ01000004
Actinomycetota
Corynebacterium sp. KPL1995 [AXLQ]
457603
457531
-
Gln
CTG
[ENA]
¡û
>W141155089
AXLR01000006
Actinomycetota
Corynebacterium sp. KPL1989 [AXLR]
311397
311469
+
Gln
CTG
[ENA]
¡û
>WENV183511917
OMJG01013478
[OMJG] food metagenome; Cotija cheese
2
74
+
Gln
CTG
[ENA]
¢þ
>WENV170686625
LFRM01155529
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
406
334
-
Gln
CTG
[ENA]
¢þ
>WENV170717937
LSQX01055213
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1467
1539
+
Gln
CTG
[ENA]
¢þ
>WENV170973551
MTKY01047450
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1712
1784
+
Gln
CTG
[ENA]
¢þ
>C181017411
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
2105099
2105027
-
Gln
CTG
-
¡û
>C181107063
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
2048525
2048453
-
Gln
CTG
-
¡û
>C181109990
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1252146
1252218
+
Gln
CTG
-
¡û
>C181109992
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1252349
1252422
+
Gln
CTG
-
¡û
>C191094622
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
968457
968385
-
Gln
CTG
-
¡û
>W141563842
JIAH01000006
Actinomycetota
Corynebacterium pseudodiphtheriticum DSM 44287 [JIAH]
307752
307824
+
Gln
CTG
[ENA]
¡û
>W1910183474
BJNT01000014
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
13744
13816
+
Gln
CTG
[ENA]
¡û
>W1910183476
BJNT01000014
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
13953
14025
+
Gln
CTG
[ENA]
¡û
>W1910442374
FWFE01000049
Actinomycetota
Corynebacterium casei JB4 [FWFE]
11376
11304
-
Gln
CTG
[ENA]
¡û
>W1911278988
NTGA01000001
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
9009
9081
+
Gln
CTG
[ENA]
¡û
>W1911422521
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
307516
307588
+
Gln
CTG
[ENA]
¡û
>W1911498428
OCTS01000001
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
109521
109449
-
Gln
CTG
[ENA]
¡û
>W1911596491
PNHF01000003
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
75725
75653
-
Gln
CTG
[ENA]
¡û
>W1911630683
PTJO01000005
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
66993
66921
-
Gln
CTG
[ENA]
¡û
>W1810326709
PUGE01000002
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
413837
413909
+
Gln
CTG
[ENA]
¡û
>W1810463931
PZZY01000003
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
122768
122840
+
Gln
CTG
[ENA]
¡û
>W1810722007
QNTT01000016
Actinomycetota
Dietzia maris SST1 [QNTT]
44257
44329
+
Gln
CTG
[ENA]
¡û
>C151005953
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
1794563
1794491
-
Gln
CTG
[Ensembl]
¡û
>C151012227
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1276089
1276161
+
Gln
CTG
[Ensembl]
¡û
>C151013284
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
1511442
1511514
+
Gln
CTG
[Ensembl]
¡û
>C151034704
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
1120906
1120978
+
Gln
CTG
[Ensembl]
¡û
>W10116381
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
198987
199059
+
Gln
CTG
[ENA]
¡û
>W10124057
AEAU01000021
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
1499
1571
+
Gln
CTG
[ENA]
¡û
>W10124059
AEAU01000021
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
1708
1780
+
Gln
CTG
[ENA]
¡û
>C11106683
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
2017189
2017117
-
Gln
CTG
[Ensembl]
¡û
>C11106685
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
2016980
2016908
-
Gln
CTG
[Ensembl]
¡û
>W11121050
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
198987
199059
+
Gln
CTG
[ENA]
¡û
>W1511459421
JVKJ01000005
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
382058
381986
-
Gln
CTG
[ENA]
¡û
>W1511466820
JVSI01000060
Actinomycetota
Corynebacterium propinquum 149_CJEI [JVSI]
156495
156567
+
Gln
CTG
[ENA]
¡û
>W1511467018
JVSN01000055
Actinomycetota
Corynebacterium propinquum 143_CAUR [JVSN]
12234
12162
-
Gln
CTG
[ENA]
¡û
>W1511469851
JVVY01000009
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
25257
25185
-
Gln
CTG
[ENA]
¡û
>W11130894
AEAU01000021
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
1499
1571
+
Gln
CTG
[ENA]
¡û
>W11130896
AEAU01000021
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
1708
1780
+
Gln
CTG
[ENA]
¡û
>W1511585604
LAYS01000003
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
24841
24769
-
Gln
CTG
[ENA]
¡û
>W11178771
AGFF01000023
Actinomycetota
Dietzia alimentaria 72 [AGFF]
166960
167032
+
Gln
CTG
[ENA]
¡û
>C161070443
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
1660006
1659934
-
Gln
CTG
[Ensembl]
¡û
>C161089870
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1315267
1315339
+
Gln
CTG
[Ensembl]
¡û
>C161089872
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1315514
1315586
+
Gln
CTG
[Ensembl]
¡û
>W1610068218
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
242567
242495
-
Gln
CTG
[ENA]
¡û
>W121127417
CAFW01000088
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
15062
14990
-
Gln
CTG
[ENA]
¡û
>W1610163648
FAUH01000016
Actinomycetota
Corynebacterium variabile [FAUH]
13849
13921
+
Gln
CTG
[ENA]
¡û
>W1610163650
FAUH01000016
Actinomycetota
Corynebacterium variabile [FAUH]
14058
14130
+
Gln
CTG
[ENA]
¡û
>W1610419407
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
117980
117908
-
Gln
CTG
[ENA]
¡û
>W1610419409
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
117777
117705
-
Gln
CTG
[ENA]
¡û
>C131005347
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1656304
1656232
-
Gln
CTG
[Ensembl]
¡û
>C131005349
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1656101
1656029
-
Gln
CTG
[Ensembl]
¡û
>W1610743768
LMTB01000016
Actinomycetota
Dietzia timorensis [LMTB]
85775
85847
+
Gln
CTG
[ENA]
¡û
>W1610920482
LSSV01000060
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
149
77
-
Gln
CTG
[ENA]
¡û
>W1610920909
LSTQ01000006
Actinomycetota
Corynebacterium stationis [LSTQ]
8786
8714
-
Gln
CTG
[ENA]
¡û
>W1611041147
LZMN01000041
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
49889
49817
-
Gln
CTG
[ENA]
¡û
>W1710065591
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
242567
242495
-
Gln
CTG
[ENA]
¡û
>W1710165315
FAUH01000016
Actinomycetota
Corynebacterium variabile [FAUH]
13849
13921
+
Gln
CTG
[ENA]
¡û
>W1710165317
FAUH01000016
Actinomycetota
Corynebacterium variabile [FAUH]
14058
14130
+
Gln
CTG
[ENA]
¡û
>W1710419143
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
117980
117908
-
Gln
CTG
[ENA]
¡û
>W1710419145
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
117777
117705
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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