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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660014 (44 seq.)
>W131058305
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
2070075
2070148
+
Gln
TTG
[ENA]
¡û
>W131110114
APIY01000324
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
14419
14492
+
Gln
TTG
[ENA]
¡û
>W131110123
APIZ01000022
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
46060
45987
-
Gln
TTG
[ENA]
¡û
>W1711335750
MBRD01000005
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
229659
229730
+
Gln
TTG
[ENA]
¡û
>W131036540
ALVW01000010
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
474271
474342
+
Gln
TTG
[ENA]
¡û
>W131065854
ANNX01000113
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
27687
27616
-
Gln
TTG
[ENA]
¡û
>W131089962
AOFE01000008
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
7266
7195
-
Gln
TTG
[ENA]
¡û
>W1711666722
MRCF01000022
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
83974
84047
+
Gln
TTG
[ENA]
¡û
>W1711711318
MTAV01000016
Cyanobacteriota
Nostoc sp. T09 [MTAV]
47017
47090
+
Gln
TTG
[ENA]
¡û
>W1711711361
MTAW01000095
Cyanobacteriota
Nostoc sp. 106C [MTAW]
77789
77862
+
Gln
TTG
[ENA]
¡û
>W1711711429
MTAX01000060
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
34562
34635
+
Gln
TTG
[ENA]
¡û
>w021715
AAVW01000139
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
7651
7577
-
Gln
TTG
[ENA]
¡û
>w002295
AAAY02000091
Cyanobacteriota
Nostoc punctiforme [AAAY]
24224
24148
-
Gln
TTG
[ENA]
¡û
>C08006923
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7068134
7068061
-
Gln
TTG
[Ensembl]
¡û
>WENV171003442
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
80438
80365
-
Gln
TTG
[ENA]
¢þ
>WENV171003705
NNBV01000429
[NNBV] plant metagenome; symbiotic tissue sample KVS11
5069
5142
+
Gln
TTG
[ENA]
¢þ
>C181004749
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1868529
1868602
+
Gln
TTG
-
¡û
>C181043652
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
1202209
1202138
-
Gln
TTG
-
¡û
>C181105230
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
3444378
3444451
+
Gln
TTG
-
¡û
>C191001271
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
6128440
6128511
+
Gln
TTG
-
¡û
>C191083049
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5275668
5275741
+
Gln
TTG
-
¡û
>W1910008404
BDGE01000042
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
224800
224871
+
Gln
TTG
[ENA]
¡û
>W1910020541
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1115840
1115767
-
Gln
TTG
[ENA]
¡û
>W1910175554
BJCF01000026
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
24456
24383
-
Gln
TTG
[ENA]
¡û
>W1910646699
LWSY01000170
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
8004
7931
-
Gln
TTG
[ENA]
¡û
>W1910792677
MRBZ01000038
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
42312
42385
+
Gln
TTG
[ENA]
¡û
>W1911118804
NOLK01000020
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
49940
49867
-
Gln
TTG
[ENA]
¡û
>W1511013865
JHEG02000048
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1520740
1520811
+
Gln
TTG
[ENA]
¡û
>W1511108007
JJML01000021
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
52747
52820
+
Gln
TTG
[ENA]
¡û
>W1511108032
JJML01000109
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
183
256
+
Gln
TTG
[ENA]
¡û
>W1511501671
JXCA01000012
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
363062
363133
+
Gln
TTG
[ENA]
¡û
>W1511501712
JXCB01000004
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
258666
258593
-
Gln
TTG
[ENA]
¡û
>C161005364
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
302837
302766
-
Gln
TTG
[Ensembl]
¡û
>W1610003517
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
290881
290954
+
Gln
TTG
[ENA]
¡û
>W1610084860
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
40192
40265
+
Gln
TTG
[ENA]
¡û
>C131004908
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
400743
400816
+
Gln
TTG
[Ensembl]
¡û
>C131010351
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
418264
418191
-
Gln
TTG
[Ensembl]
¡û
>C131004142
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1166260
1166331
+
Gln
TTG
[Ensembl]
¡û
>W1610931015
LUFH01000526
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
804
876
+
Gln
TTG
[ENA]
¡û
>W1610979414
LWAJ01000280
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
2107
2178
+
Gln
TTG
[ENA]
¡û
>W1611066457
MBRD01000005
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
229659
229730
+
Gln
TTG
[ENA]
¡û
>W1710004137
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
290881
290954
+
Gln
TTG
[ENA]
¡û
>W1710087973
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2598789
2598861
+
Gln
TTG
[ENA]
¡û
>W1710089722
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
40192
40265
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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