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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660463 (27 seq.)
>WENV180015886
FSTQ01000022
[FSTQ] metagenome; soil
10476
10402
-
Cys
GCA
[ENA]
¢þ
>WENV180019808
FTCO01001543
[FTCO] metagenome; soil
8893
8965
+
Cys
GCA
[ENA]
¢þ
>WENV180028011
FTIZ01483901
[FTIZ] metagenome; soil
112
40
-
Cys
GCA
[ENA]
¢þ
>WENV180029154
FTJI01085772
[FTJI] metagenome; soil
1254
1328
+
Cys
GCA
[ENA]
¢þ
>WENV180034683
FTKR01096716
[FTKR] metagenome; soil
1254
1328
+
Cys
GCA
[ENA]
¢þ
>W141073090
ASRX01000011
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
156889
156815
-
Cys
GCA
[ENA]
¡û
>C08008905
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
462075
462149
+
Cys
GCA
[Ensembl]
¡û
>C181012475
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
747316
747389
+
Cys
GCA
-
¡û
>C191010004
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
523279
523352
+
Cys
GCA
-
¡û
>C191010054
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
753662
753735
+
Cys
GCA
-
¡û
>C131010738
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
703231
703305
+
Cys
GCA
[Ensembl]
¡û
>W1610520369
JELX01000410
Myxococcota
Sorangium cellulosum [JELX]
1080
1006
-
Cys
GCA
[ENA]
¡û
>W1610520452
JELY01002633
Myxococcota
Sorangium cellulosum [JELY]
2144
2218
+
Cys
GCA
[ENA]
¡û
>W1610520503
JELZ01002334
Myxococcota
Sorangium cellulosum [JELZ]
586
512
-
Cys
GCA
[ENA]
¡û
>W1610520524
JEMA01000419
Myxococcota
Sorangium cellulosum [JEMA]
929
855
-
Cys
GCA
[ENA]
¡û
>W1610520595
JEMB01002708
Myxococcota
Sorangium cellulosum [JEMB]
1979
2053
+
Cys
GCA
[ENA]
¡û
>W1610520646
JEMC01002987
Myxococcota
Sorangium cellulosum [JEMC]
1549
1475
-
Cys
GCA
[ENA]
¡û
>W1610520677
JEMD01001468
Myxococcota
Sorangium cellulosum [JEMD]
3249
3175
-
Cys
GCA
[ENA]
¡û
>W1610520723
JEME01001188
Myxococcota
Sorangium cellulosum [JEME]
192
266
+
Cys
GCA
[ENA]
¡û
>W1710615847
JELX01000410
Myxococcota
Sorangium cellulosum [JELX]
1080
1006
-
Cys
GCA
[ENA]
¡û
>W1710615930
JELY01002633
Myxococcota
Sorangium cellulosum [JELY]
2144
2218
+
Cys
GCA
[ENA]
¡û
>W1710615981
JELZ01002334
Myxococcota
Sorangium cellulosum [JELZ]
586
512
-
Cys
GCA
[ENA]
¡û
>W1710616002
JEMA01000419
Myxococcota
Sorangium cellulosum [JEMA]
929
855
-
Cys
GCA
[ENA]
¡û
>W1710616073
JEMB01002708
Myxococcota
Sorangium cellulosum [JEMB]
1979
2053
+
Cys
GCA
[ENA]
¡û
>W1710616124
JEMC01002987
Myxococcota
Sorangium cellulosum [JEMC]
1549
1475
-
Cys
GCA
[ENA]
¡û
>W1710616155
JEMD01001468
Myxococcota
Sorangium cellulosum [JEMD]
3249
3175
-
Cys
GCA
[ENA]
¡û
>W1710616201
JEME01001188
Myxococcota
Sorangium cellulosum [JEME]
192
266
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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