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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66442 (39 seq.)
>W1710867068
LMHZ01000006
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
87121
87035
-
Leu
CAA
[ENA]
¡û
>WENV180022294
FTFY01000092
[FTFY] metagenome; soil
441
527
+
Leu
CAA
[ENA]
¡û
>WENV180033720
FTKL01040757
[FTKL] metagenome; soil
830
744
-
Leu
CAA
[ENA]
¡û
>WENV180039837
LLBY010181863
[LLBY] soil metagenome; soil from tomato rhizosphere
783
697
-
Leu
CAA
[ENA]
¡û
>WENV180249128
OBEQ010171068
[OBEQ] groundwater metagenome; groundwater
6196
6282
+
Leu
CAA
[ENA]
¡û
>WENV180252419
OBEQ010448131
[OBEQ] groundwater metagenome; groundwater
153
239
+
Leu
CAA
[ENA]
¡û
>W141241344
CAHF01000013
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
85154
85240
+
Leu
CAA
[ENA]
¡û
>W141258909
CBXX010000019
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
24449
24535
+
Leu
CAA
[ENA]
¡û
>WENV170565530
FJVX01001341
[FJVX] metagenome; soil
840
754
-
Leu
CAA
[ENA]
¡û
>C181071840
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
3596098
3596184
+
Leu
CAA
-
¡û
>W1911802811
QYUO01000001
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
1052374
1052288
-
Leu
CAA
[ENA]
¡û
>W1810887523
QUQN01000003
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
755814
755728
-
Leu
CAA
[ENA]
¡û
>C151062626
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1176211
1176125
-
Leu
CAA
[Ensembl]
¡û
>C151082367
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
3804312
3804398
+
Leu
CAA
-
¡û
>W2010268968
CABKRR020000001
Betaproteobacteria
Noviherbaspirillum massiliense [CABKRR]
2367533
2367619
+
Leu
CAA
[ENA]
¡û
>W2010717562
JACHYE010000001
Betaproteobacteria
Herbaspirillum sp. Sphag64 [JACHYE]
589240
589326
+
Leu
CAA
[ENA]
¡û
>W2010717610
JACHYF010000001
Betaproteobacteria
Herbaspirillum sp. Sphag1AN [JACHYF]
110941
111027
+
Leu
CAA
[ENA]
¡û
>W2011344442
QYUO01000001
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
1052374
1052288
-
Leu
CAA
[ENA]
¡û
>W2011671355
SPNH01000032
Betaproteobacteria
Herbaspirillum sp. 3C11 [SPNH]
34338
34424
+
Leu
CAA
[ENA]
¡û
>W2011671356
SPNH01000032
Betaproteobacteria
Herbaspirillum sp. 3C11 [SPNH]
5101
5015
-
Leu
CAA
[ENA]
¡û
>W2011671423
SPNI01000005
Betaproteobacteria
Herbaspirillum sp. 3R-11 [SPNI]
15697
15783
+
Leu
CAA
[ENA]
¡û
>W2011671457
SPNJ01000003
Betaproteobacteria
Herbaspirillum sp. 3R11 [SPNJ]
15697
15783
+
Leu
CAA
[ENA]
¡û
>W2012048012
VIWD01000002
Betaproteobacteria
Herbaspirillum hiltneri 3195 [VIWD]
404586
404500
-
Leu
CAA
[ENA]
¡û
>ENV09004075
ADIG01004361
Groundwater metagenome 4000601.lucy.pga.C1
117
203
+
Leu
CAA
[ENA]
¡û
>W2110289223
JACYOX010000009
Betaproteobacteria
Noviherbaspirillum soli SUEMI10 [JACYOX]
41566
41652
+
Leu
CAA
[ENA]
¡û
>W2110566835
JAGQEE010000006
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
55574
55488
-
Leu
CAA
[ENA]
¡û
>W2110566861
JAGQEF010000004
Betaproteobacteria
Collimonas sp. RXD172-2 [JAGQEF]
217332
217246
-
Leu
CAA
[ENA]
¡û
>W2110566917
JAGQEG010000041
Betaproteobacteria
Collimonas sp. RXD178 [JAGQEG]
45894
45980
+
Leu
CAA
[ENA]
¡û
>W2110638142
JAHQRJ010000001
Betaproteobacteria
Noviherbaspirillum sp. L7-7A [JAHQRJ]
524221
524135
-
Leu
CAA
[ENA]
¡û
>W1511480680
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
900542
900456
-
Leu
CAA
[ENA]
¡û
>W1511683789
LFLS01000038
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
33930
33844
-
Leu
CAA
[ENA]
¡û
>W1511683854
LFLU01000001
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
400542
400456
-
Leu
CAA
[ENA]
¡û
>C161053620
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1241413
1241327
-
Leu
CAA
[Ensembl]
¡û
>C161053715
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1057176
1057090
-
Leu
CAA
[Ensembl]
¡û
>C161053813
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
995036
994950
-
Leu
CAA
[Ensembl]
¡û
>W121061949
AJHH01000004
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
227
141
-
Leu
CAA
[ENA]
¡û
>W121086382
AKJW01000059
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
86794
86708
-
Leu
CAA
[ENA]
¡û
>W1610729414
LMHZ01000006
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
87121
87035
-
Leu
CAA
[ENA]
¡û
>W1710564218
FOQI01000007
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
218308
218222
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK