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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67003 (42 seq.)
>W1710793516
LJPL01000003
Bacillota
Streptococcus pasteurianus [LJPL]
111630
111715
+
Leu
CAG
[ENA]
¡û
>W1710989045
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621279
621364
+
Leu
CAG
[ENA]
¡û
>W1711006289
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9539
9624
+
Leu
CAG
[ENA]
¡û
>C171084872
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
2212675
2212760
+
Leu
CAG
-
¡û
>WENV180116390
OAQU01000218
[OAQU] human gut metagenome; ENVO:feces
3076
2991
-
Leu
CAG
[ENA]
¡û
>WENV180116444
OAQV01000004
[OAQV] human gut metagenome; ENVO:feces
41455
41370
-
Leu
CAG
[ENA]
¡û
>WENV180401593
OBRM01000185
[OBRM] human gut metagenome; ENVO:feces
3076
2991
-
Leu
CAG
[ENA]
¡û
>WENV180415606
OBVF01000021
[OBVF] human gut metagenome; faeces
57223
57138
-
Leu
CAG
[ENA]
¡û
>WENV181338200
OFMF01000940
[OFMF] human gut metagenome; human gut
19095
19180
+
Leu
CAG
[ENA]
¡û
>WENV181555196
OGIT01000098
[OGIT] metagenome; Human gut stool
7062
7147
+
Leu
CAG
[ENA]
¡û
>WENV181561477
OGJD01004145
[OGJD] metagenome; Human gut stool
3467
3552
+
Leu
CAG
[ENA]
¡û
>WENV181579160
OGJY01025031
[OGJY] metagenome; Human gut stool
651
736
+
Leu
CAG
[ENA]
¡û
>WENV181879246
OGXF01000052
[OGXF] human gut metagenome; faeces
45965
46050
+
Leu
CAG
[ENA]
¡û
>WENV181887263
OGXL01002629
[OGXL] human gut metagenome; faeces
6106
6021
-
Leu
CAG
[ENA]
¡û
>WENV181889684
OGXN01000795
[OGXN] human gut metagenome; faeces
15993
16078
+
Leu
CAG
[ENA]
¡û
>WENV181909252
OGYB01035973
[OGYB] human gut metagenome; faeces
598
683
+
Leu
CAG
[ENA]
¡û
>WENV181948600
OGZE01011388
[OGZE] human gut metagenome; faeces
663
748
+
Leu
CAG
[ENA]
¡û
>WENV181987246
OHAM01038210
[OHAM] human gut metagenome; faeces
448
533
+
Leu
CAG
[ENA]
¡û
>WENV181997957
OHAU01009996
[OHAU] human gut metagenome; faeces
3293
3208
-
Leu
CAG
[ENA]
¡û
>WENV182164466
OHMN01000369
[OHMN] human gut metagenome; faeces
35015
34930
-
Leu
CAG
[ENA]
¡û
>WENV182394663
OIEJ01000183
[OIEJ] human gut metagenome; human gut
35943
36028
+
Leu
CAG
[ENA]
¡û
>W141261893
CCBC010000201
Bacillota
Streptococcus gallolyticus [CCBC]
5829
5744
-
Leu
CAG
[ENA]
¡û
>WENV182890279
OKSF01014019
[OKSF] human gut metagenome; faeces
536
621
+
Leu
CAG
[ENA]
¡û
>WENV182951053
OKVT01001556
[OKVT] human gut metagenome; human gut
367
282
-
Leu
CAG
[ENA]
¡û
>WENV183602678
OODK01000081
[OODK] human gut metagenome; human gut
32250
32165
-
Leu
CAG
[ENA]
¡û
>WENV183605766
OODN01000019
[OODN] human gut metagenome; human gut
58532
58447
-
Leu
CAG
[ENA]
¡û
>C181214998
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
1976629
1976714
+
Leu
CAG
-
¡û
>W1810907644
QVHX01000005
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
110505
110590
+
Leu
CAG
[ENA]
¡û
>W2011843223
UHFM01000006
Bacillota
Streptococcus gallolyticus NCTC13767 [UHFM]
454166
454251
+
Leu
CAG
[ENA]
¡û
>W2011843491
UHFP01000001
Bacillota
Streptococcus infantarius NCTC13760 [UHFP]
1696424
1696509
+
Leu
CAG
[ENA]
¡û
>W2110370339
JADPLU010000003
Bacillota
Streptococcus pasteurianus 1001285H_161024_G5 [JADPLU]
50647
50562
-
Leu
CAG
[ENA]
¡û
>W2110595158
JAHDAL010000001
Bacillota
Streptococcus infantarius subsp. infantarius PA11383KF6 [JAHDAL]
220956
220871
-
Leu
CAG
[ENA]
¡û
>W2110595803
JAHDJM010000005
Bacillota
Streptococcus infantarius subsp. infantarius P4324KF1 [JAHDJM]
70937
71022
+
Leu
CAG
[ENA]
¡û
>W2110595844
JAHDJO010000001
Bacillota
Streptococcus macedonicus P4324KF2 [JAHDJO]
4240
4155
-
Leu
CAG
[ENA]
¡û
>C231588400
CP116957
Bacillota
Streptococcus pasteurianus WUSP070 [CP116957]
60191
60106
-
Leu
CAG
-
¡û
>C11121188
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
1895052
1895137
+
Leu
CAG
[Ensembl]
¡û
>W1511447389
JUYN01000021
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
93370
93285
-
Leu
CAG
[ENA]
¡û
>W1511530619
JYKU01000014
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
215033
215118
+
Leu
CAG
[ENA]
¡û
>C121017497
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
2014392
2014477
+
Leu
CAG
[Ensembl]
¡û
>C161059331
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
140949
140864
-
Leu
CAG
[Ensembl]
¡û
>W1610843921
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621279
621364
+
Leu
CAG
[ENA]
¡û
>W1610856939
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9539
9624
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK