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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670393 (11 seq.)
>W1711352942
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
388888
388962
+
Gln
TTG
[ENA]
¡û
>C171036262
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2198807
2198881
+
Gln
TTG
-
¡û
>W141067185
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
426205
426131
-
Gln
TTG
[ENA]
¡û
>WENV170022592
BCQK01023840
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
416
344
-
Gln
TTG
[ENA]
¢þ
>WENV170025031
BCQL01188873
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
247
321
+
Gln
TTG
[ENA]
¢þ
>C191127763
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2261783
2261709
-
Gln
TTG
-
¡û
>C191182111
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
3430247
3430175
-
Gln
TTG
-
¡û
>W1910545623
FZLT01000067
Bacteroidota
Cellulophaga lytica [FZLT]
84150
84222
+
Gln
TTG
[ENA]
¡û
>W1910693638
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
122305
122379
+
Gln
TTG
[ENA]
¡û
>C151046343
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2030509
2030583
+
Gln
TTG
[Ensembl]
¡û
>C11105674
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2072118
2072192
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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