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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67040 (70 seq.)
>W1711284853
LZRO01000036
Bacteroidota
Bizionia sp. APA-3 [LZRO]
29285
29199
-
Leu
GAG
[ENA]
¡û
>W1711797283
MWRZ01000003
Bacteroidota
Zobellia sp. OII3 galactanivorans [MWRZ]
344397
344311
-
Leu
GAG
[ENA]
¡û
>W131211417
ATMR01000091
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
50
136
+
Leu
GAG
[ENA]
¡û
>W131224952
AUDE01000018
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
13944
14028
+
Leu
GAG
[ENA]
¡û
>C171074121
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
900416
900502
+
Leu
GAG
-
¡û
>W08004305
ABHI01000004
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
127468
127552
+
Leu
GAG
[ENA]
¡û
>WENV182557652
OJDK01001155
[OJDK] seawater metagenome; Sea water
259
343
+
Leu
GAG
[ENA]
¡û
>WENV182561075
OJDV01003744
[OJDV] seawater metagenome; Sea water
1752
1836
+
Leu
GAG
[ENA]
¡û
>WENV182588084
OJHO01002866
[OJHO] seawater metagenome; Sea water
1876
1960
+
Leu
GAG
[ENA]
¡û
>WENV183065110
OLII01023840
[OLII] seawater metagenome; Sea water
105
189
+
Leu
GAG
[ENA]
¡û
>WENV170025149
BCQL01232462
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
285
201
-
Leu
GAG
[ENA]
¡û
>WENV170228891
CEQG01050135
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1203
1119
-
Leu
GAG
[ENA]
¡û
>WENV170539744
CEWR01289616
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1638
1554
-
Leu
GAG
[ENA]
¡û
>W1810672065
QJTD01000006
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
150212
150128
-
Leu
GAG
[ENA]
¡û
>W1810759618
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
23305
23391
+
Leu
GAG
[ENA]
¡û
>W1810787634
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
24092
24176
+
Leu
GAG
[ENA]
¡û
>W1810788337
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
524729
524645
-
Leu
GAG
[ENA]
¡û
>W1810885430
QUNH01000005
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
25674
25758
+
Leu
GAG
[ENA]
¡û
>C151002325
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
27697
27781
+
Leu
GAG
[Ensembl]
¡û
>C151098502
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
3458708
3458622
-
Leu
GAG
[Ensembl]
¡û
>W2010597070
JABFDC010000005
Bacteroidota
Winogradskyella undariae Ha325 [JABFDC]
22184
22268
+
Leu
GAG
[ENA]
¡û
>W2010597104
JABFDD010000005
Bacteroidota
Winogradskyella undariae Z3185 [JABFDD]
23171
23255
+
Leu
GAG
[ENA]
¡û
>W2010597160
JABFDE010000019
Bacteroidota
Winogradskyella sp. Ha767 [JABFDE]
13332
13248
-
Leu
GAG
[ENA]
¡û
>W2010597188
JABFDF010000006
Bacteroidota
Winogradskyella sp. HL116 [JABFDF]
21931
22015
+
Leu
GAG
[ENA]
¡û
>W2010597219
JABFDG010000002
Bacteroidota
Winogradskyella sp. HL634 [JABFDG]
26241
26325
+
Leu
GAG
[ENA]
¡û
>W2010597262
JABFDH010000005
Bacteroidota
Winogradskyella sp. HL4150 [JABFDH]
309443
309359
-
Leu
GAG
[ENA]
¡û
>W2010597284
JABFDI010000013
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
32644
32728
+
Leu
GAG
[ENA]
¡û
>W2010597336
JABFDJ010000008
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
23356
23440
+
Leu
GAG
[ENA]
¡û
>W2010597359
JABFDK010000002
Bacteroidota
Winogradskyella sp. Z3138 [JABFDK]
348053
347969
-
Leu
GAG
[ENA]
¡û
>W2010598121
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
3571305
3571389
+
Leu
GAG
[ENA]
¡û
>W2010612707
JABRWP010000011
Bacteroidota
Winogradskyella eckloniae EC29 [JABRWP]
101605
101521
-
Leu
GAG
[ENA]
¡û
>W2010612720
JABRWQ010000002
Bacteroidota
Winogradskyella litoriviva KMM6491 [JABRWQ]
21527
21611
+
Leu
GAG
[ENA]
¡û
>W2010631844
JABTEL010000002
Bacteroidota
Winogradskyella undariae CCUG 63832 [JABTEL]
484224
484140
-
Leu
GAG
[ENA]
¡û
>W2011355429
RAQJ01000004
Bacteroidota
Ichthyenterobacterium magnum DSM 26283 [RAQJ]
23367
23451
+
Leu
GAG
[ENA]
¡û
>W2012107698
VOSB01000015
Bacteroidota
Psychroserpens burtonensis ACAM 167 [VOSB]
13617
13701
+
Leu
GAG
[ENA]
¡û
>W2012131005
VSKK01000001
Bacteroidota
Bizionia myxarmorum ADA-4 [VSKK]
1668612
1668528
-
Leu
GAG
[ENA]
¡û
>W2012131060
VSKL01000005
Bacteroidota
Bizionia algoritergicola APA-1 [VSKL]
282144
282060
-
Leu
GAG
[ENA]
¡û
>W2012355895
WJYA01000007
Bacteroidota
Winogradskyella sp. ZXX205 [WJYA]
208419
208335
-
Leu
GAG
[ENA]
¡û
>W2012409098
WOWS01000008
Bacteroidota
Winogradskyella sp. HL2-2 [WOWS]
20169
20253
+
Leu
GAG
[ENA]
¡û
>W2110046664
BMWQ01000006
Bacteroidota
Winogradskyella epiphytica KCTC 12220 [BMWQ]
143847
143763
-
Leu
GAG
[ENA]
¡û
>W2110240109
JACNMJ010000010
Bacteroidota
Flavihalobacter algicola Dm15 [JACNMJ]
23874
23958
+
Leu
GAG
[ENA]
¡û
>W2110242787
JACOME010000007
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOME]
21346
21430
+
Leu
GAG
[ENA]
¡û
>W2110246527
JACOQD010000007
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOQD]
21346
21430
+
Leu
GAG
[ENA]
¡û
>W2110326475
JADILU010000009
Bacteroidota
Arcticiflavibacter luteus SM1212 [JADILU]
25507
25591
+
Leu
GAG
[ENA]
¡û
>W2110361162
JADOET010000018
Bacteroidota
Winogradskyella marina F6397 [JADOET]
30106
30190
+
Leu
GAG
[ENA]
¡û
>W2110611563
JAHKPN010000019
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
22254
22170
-
Leu
GAG
[ENA]
¡û
>W2110611757
JAHKPS010000013
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
26265
26349
+
Leu
GAG
[ENA]
¡û
>W2110611952
JAHKPY010000001
Bacteroidota
Zobellia uliginosa C3R17 [JAHKPY]
63126
63210
+
Leu
GAG
[ENA]
¡û
>W2110612894
JAHKQS010000008
Bacteroidota
Zobellia galactanivorans A2M03 [JAHKQS]
31079
31164
+
Leu
GAG
[ENA]
¡û
>W2110668706
JAICBG010000001
Bacteroidota
Winogradskyella sp. SM1960 [JAICBG]
30015
30099
+
Leu
GAG
[ENA]
¡û
>C211062757
CP045067
Bacteroidota
Lacinutrix sp. WUR7 [CP045067]
63340
63424
+
Leu
GAG
-
¡û
>C211117894
CP058981
Bacteroidota
Winogradskyella sp. HaHa_3_26 [CP058981]
418628
418712
+
Leu
GAG
-
¡û
>C231053711
CP046242
Bacteroidota
Bizionia sp. M204 [CP046242]
458675
458591
-
Leu
GAG
-
¡û
>C231575682
CP116221
Bacteroidota
Psychroserpens sp. MSW6 [CP116221]
1037778
1037694
-
Leu
GAG
-
¡û
>C241155452
CP053348
Bacteroidota
Winogradskyella forsetii HL857 [CP053348]
1669965
1669881
-
Leu
GAG
-
¡û
>C241155475
CP053349
Bacteroidota
Winogradskyella forsetii HL6110 [CP053349]
2959210
2959126
-
Leu
GAG
-
¡û
>C241155524
CP053350
Bacteroidota
Winogradskyella forsetii SW133 [CP053350]
586142
586058
-
Leu
GAG
-
¡û
>C241155557
CP053351
Bacteroidota
Winogradskyella schleiferi Z215 [CP053351]
1615652
1615568
-
Leu
GAG
-
¡û
>C241155600
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
1356710
1356626
-
Leu
GAG
-
¡û
>W1511388597
JSWG01000001
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
27781
27865
+
Leu
GAG
[ENA]
¡û
>W1511432822
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
1577609
1577693
+
Leu
GAG
[ENA]
¡û
>W1511505208
JXJO01000016
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
203120
203036
-
Leu
GAG
[ENA]
¡û
>W1511505239
JXJP01000008
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
20455
20541
+
Leu
GAG
[ENA]
¡û
>W1610633028
LIQI01000031
Bacteroidota
Lacinutrix himadriensis [LIQI]
244132
244046
-
Leu
GAG
[ENA]
¡û
>W1611042638
LZRO01000036
Bacteroidota
Bizionia sp. APA-3 [LZRO]
29285
29199
-
Leu
GAG
[ENA]
¡û
>W1710516988
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
443765
443679
-
Leu
GAG
[ENA]
¡û
>W1710570963
FOVN01000005
Bacteroidota
Bizionia echini [FOVN]
28867
28951
+
Leu
GAG
[ENA]
¡û
>W1710587774
FQYU01000003
Bacteroidota
Pseudozobellia thermophila [FQYU]
347048
346962
-
Leu
GAG
[ENA]
¡û
>W1710598552
FTOB01000004
Bacteroidota
Zobellia uliginosa [FTOB]
837656
837570
-
Leu
GAG
[ENA]
¡û
>W1710767460
LIQI01000031
Bacteroidota
Lacinutrix himadriensis [LIQI]
244132
244046
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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