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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670405 (31 seq.)
>W1711305368
MAMQ01000075
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
5677
5751
+
Asn
GTT
[ENA]
¡û
>W131241841
BASD01000027
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
62761
62687
-
Asn
GTT
[ENA]
¡û
>W131241847
BASD01000031
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
29156
29082
-
Asn
GTT
[ENA]
¡û
>W1711525221
MLQN01000014
Campylobacterota
Helicobacter sp. CLO-3 [MLQN]
50099
50025
-
Asn
GTT
[ENA]
¡û
>C026891
BX571656
Campylobacterota
Wolinella succinogenes [BX571656]
369320
369394
+
Asn
GTT
[Ensembl]
¡û
>WENV180116928
OARB01000076
[OARB] human gut metagenome; ENVO:feces
11224
11150
-
Asn
GTT
[ENA]
¢þ
>WENV180117828
OARM01000285
[OARM] human gut metagenome; ENVO:feces
1221
1147
-
Asn
GTT
[ENA]
¢þ
>WENV180229080
OBCH01000099
[OBCH] human gut metagenome; human gut
22165
22239
+
Asn
GTT
[ENA]
¢þ
>W141204213
AZJI01000005
Campylobacterota
Helicobacter macacae MIT 99-5501 [AZJI]
232372
232298
-
Asn
GTT
[ENA]
¡û
>W141204252
AZJJ01000002
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
97091
97165
+
Asn
GTT
[ENA]
¡û
>W141275675
JADE01000003
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
34580
34654
+
Asn
GTT
[ENA]
¡û
>WENV183641485
OQVL01045765
[OQVL] human gut metagenome; human gut
1137
1211
+
Asn
GTT
[ENA]
¢þ
>WENV183648250
OQVS01009614
[OQVS] human gut metagenome; human gut
2456
2530
+
Asn
GTT
[ENA]
¢þ
>C191209079
LR134366
Campylobacterota
Wolinella succinogenes NCTC11488 [LR134366]
1399906
1399980
+
Asn
GTT
-
¡û
>C191213746
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
399565
399491
-
Asn
GTT
-
¡û
>W1910546825
FZNE01000003
Campylobacterota
Helicobacter cholecystus [FZNE]
7509
7583
+
Asn
GTT
[ENA]
¡û
>W1910549538
FZPI01000002
Campylobacterota
Helicobacter pametensis [FZPI]
521107
521033
-
Asn
GTT
[ENA]
¡û
>W1910549648
FZPL01000004
Campylobacterota
Helicobacter pametensis [FZPL]
379432
379358
-
Asn
GTT
[ENA]
¡û
>W1910549738
FZPO01000002
Campylobacterota
Helicobacter equorum [FZPO]
28183
28109
-
Asn
GTT
[ENA]
¡û
>W1910550638
FZRC01000016
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZRC]
50252
50178
-
Asn
GTT
[ENA]
¡û
>W1910584282
JXTW01000002
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
21805
21731
-
Asn
GTT
[ENA]
¡û
>W1910889356
NESU01000012
Campylobacterota
Helicobacter sp. TUL [NESU]
49803
49877
+
Asn
GTT
[ENA]
¡û
>W1810046370
NXLL01000018
Campylobacterota
Helicobacter sp. MIT 00-7814 [NXLL]
4460
4386
-
Asn
GTT
[ENA]
¡û
>W1810046389
NXLM01000002
Campylobacterota
Helicobacter sp. MIT 99-10781 [NXLM]
54499
54573
+
Asn
GTT
[ENA]
¡û
>W1810046448
NXLN01000022
Campylobacterota
Helicobacter sp. MIT 01-3238 [NXLN]
12188
12262
+
Asn
GTT
[ENA]
¡û
>W1810046664
NXLT01000004
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
134335
134409
+
Asn
GTT
[ENA]
¡û
>W1810046700
NXLU01000002
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
303541
303467
-
Asn
GTT
[ENA]
¡û
>W1810046731
NXLV01000006
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
55597
55523
-
Asn
GTT
[ENA]
¡û
>C161081181
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
1125960
1126034
+
Asn
GTT
-
¡û
>C161097584
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
1280901
1280975
+
Asn
GTT
[Ensembl]
¡û
>W1611054835
MAMQ01000075
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
5677
5751
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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