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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670434 (85 seq.)
>A171003588
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1949277
1949350
+
Gly
CCC
-
¡û
>A171004541
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1707310
1707237
-
Gly
CCC
-
¡û
>A171004591
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2341770
2341843
+
Gly
CCC
-
¡û
>A171004772
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
762170
762243
+
Gly
CCC
-
¡û
>A171004825
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
730029
730102
+
Gly
CCC
-
¡û
>A171004878
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
785004
785077
+
Gly
CCC
-
¡û
>A171004953
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3427916
3427843
-
Gly
CCC
-
¡û
>A171005003
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3377078
3377005
-
Gly
CCC
-
¡û
>A171005055
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3472388
3472315
-
Gly
CCC
-
¡û
>A171005097
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2922731
2922804
+
Gly
CCC
-
¡û
>A171005146
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2000032
2000105
+
Gly
CCC
-
¡û
>A171005264
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4263866
4263793
-
Gly
CCC
-
¡û
>A171005308
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2595769
2595842
+
Gly
CCC
-
¡û
>A171005412
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3313037
3313110
+
Gly
CCC
-
¡û
>A171005468
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3349656
3349729
+
Gly
CCC
-
¡û
>WENV180345638
OBLN01001399
[OBLN] sediment metagenome; sediment
8012
8086
+
Gly
CCC
[ENA]
¢þ
>WENV170008232
AMZC01005332
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2375
2448
+
Gly
CCC
[ENA]
¢þ
>At1375
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
849942
850013
+
Gly
CCC
[Ensembl]
¡û
>At1517
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2254827
2254898
+
Gly
CCC
[Ensembl]
¡û
>WENV170644724
JMBW01073890
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
44
117
+
Gly
CCC
[ENA]
¢þ
>WENV170684889
LFRM01063560
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
82894
82967
+
Gly
CCC
[ENA]
¢þ
>WENV170721684
LSQX01200275
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3187
3114
-
Gly
CCC
[ENA]
¢þ
>WENV170784339
MCHG01000959
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
2187
2114
-
Gly
CCC
[ENA]
¢þ
>W1910230872
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
474725
474798
+
Gly
CCC
[ENA]
¡û
>W1910569247
JJOR01000109
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
23619
23692
+
Gly
CCC
[ENA]
¡û
>W1910569292
JJOS01000035
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
47735
47808
+
Gly
CCC
[ENA]
¡û
>W1910569373
JJOT01000109
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
1311
1238
-
Gly
CCC
[ENA]
¡û
>W1910569402
JJOU01000122
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
1309
1236
-
Gly
CCC
[ENA]
¡û
>W1910569693
JJPA01000067
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
48319
48392
+
Gly
CCC
[ENA]
¡û
>W1910569742
JJPB01000037
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
22990
23063
+
Gly
CCC
[ENA]
¡û
>W1910569834
JJPC01000164
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
27513
27586
+
Gly
CCC
[ENA]
¡û
>W1910569877
JJPD01000180
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
22993
23066
+
Gly
CCC
[ENA]
¡û
>W1910569890
JJPE01000003
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
14637
14710
+
Gly
CCC
[ENA]
¡û
>W1910569983
JJPF01000127
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
22949
23022
+
Gly
CCC
[ENA]
¡û
>W1910570012
JJPG01000060
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
22990
23063
+
Gly
CCC
[ENA]
¡û
>W1910570046
JJPH01000020
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
1309
1236
-
Gly
CCC
[ENA]
¡û
>W1910570092
JJPI01000011
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
43402
43329
-
Gly
CCC
[ENA]
¡û
>W1910570161
JJPJ01000046
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
7362
7289
-
Gly
CCC
[ENA]
¡û
>W1910570240
JJPK01000118
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
41002
40929
-
Gly
CCC
[ENA]
¡û
>W1910570256
JJPL01000057
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
27535
27608
+
Gly
CCC
[ENA]
¡û
>W1910570311
JJPM01000109
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
29427
29500
+
Gly
CCC
[ENA]
¡û
>W1910570351
JJPN01000023
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
32381
32454
+
Gly
CCC
[ENA]
¡û
>W1910570434
JJPO01000135
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
77401
77474
+
Gly
CCC
[ENA]
¡û
>W1910570461
JJPP01000038
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
27532
27605
+
Gly
CCC
[ENA]
¡û
>W1910570519
JJPQ01000061
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
32410
32483
+
Gly
CCC
[ENA]
¡û
>W1910570566
JJPR01000074
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
47857
47930
+
Gly
CCC
[ENA]
¡û
>W1910570633
JJPS01000185
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
11374
11301
-
Gly
CCC
[ENA]
¡û
>W1910570662
JJPT01000038
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
179167
179240
+
Gly
CCC
[ENA]
¡û
>W1910570726
JJPU01000126
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
7363
7290
-
Gly
CCC
[ENA]
¡û
>W1910570778
JJPV01000062
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
10027
10100
+
Gly
CCC
[ENA]
¡û
>W1910570826
JJPW01000051
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
10029
10102
+
Gly
CCC
[ENA]
¡û
>W1910570893
JJPX01000156
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
47816
47889
+
Gly
CCC
[ENA]
¡û
>W1910570913
JJPY01000041
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
32374
32447
+
Gly
CCC
[ENA]
¡û
>W1910570976
JJPZ01000071
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
32380
32453
+
Gly
CCC
[ENA]
¡û
>W1910571038
JJQA01000106
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
48437
48510
+
Gly
CCC
[ENA]
¡û
>W1910571076
JJQB01000079
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
30752
30825
+
Gly
CCC
[ENA]
¡û
>W1910571107
JJQC01000020
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
30365
30438
+
Gly
CCC
[ENA]
¡û
>W1910571178
JJQD01000116
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
27513
27586
+
Gly
CCC
[ENA]
¡û
>W1910571226
JJQE01000112
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
22952
23025
+
Gly
CCC
[ENA]
¡û
>W1910571298
JJQF01000127
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
18807
18880
+
Gly
CCC
[ENA]
¡û
>W1910571352
JJQG01000168
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
23497
23570
+
Gly
CCC
[ENA]
¡û
>W1910571369
JJQH01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
23598
23671
+
Gly
CCC
[ENA]
¡û
>W1910571452
JJQI01000118
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
97005
97078
+
Gly
CCC
[ENA]
¡û
>W1910571497
JJQJ01000173
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
7364
7291
-
Gly
CCC
[ENA]
¡û
>W1910571517
JJQK01000045
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
77660
77733
+
Gly
CCC
[ENA]
¡û
>W1910571673
JJQM01000166
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
23598
23671
+
Gly
CCC
[ENA]
¡û
>W1910571690
JJQN01000042
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
62840
62913
+
Gly
CCC
[ENA]
¡û
>W1910571769
JJQO01000287
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
23642
23715
+
Gly
CCC
[ENA]
¡û
>W1910571840
JJQP01000268
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
23620
23693
+
Gly
CCC
[ENA]
¡û
>W1910571883
JJQQ01000144
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
52841
52914
+
Gly
CCC
[ENA]
¡û
>W1910571948
JJQR01000160
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
23636
23709
+
Gly
CCC
[ENA]
¡û
>W1910571995
JJQS01000117
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
23640
23713
+
Gly
CCC
[ENA]
¡û
>W1910572027
JJQT01000126
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
7369
7296
-
Gly
CCC
[ENA]
¡û
>W1910572058
JJQU01000050
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
47717
47790
+
Gly
CCC
[ENA]
¡û
>W1910572105
JJQV01000008
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
23636
23709
+
Gly
CCC
[ENA]
¡û
>W1910572159
JJQW01000026
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
23616
23689
+
Gly
CCC
[ENA]
¡û
>W1910572230
JJQX01000175
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
7334
7261
-
Gly
CCC
[ENA]
¡û
>W1910572300
JJQZ01000024
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
23595
23668
+
Gly
CCC
[ENA]
¡û
>W1910572384
JJRA01000117
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
23638
23711
+
Gly
CCC
[ENA]
¡û
>W1910572398
JJRB01000023
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
126857
126784
-
Gly
CCC
[ENA]
¡û
>W1910575042
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1554186
1554259
+
Gly
CCC
[ENA]
¡û
>W1910635245
LMVP01000109
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
267
196
-
Gly
CCC
[ENA]
¡û
>W1910694811
MDTP02000222
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
2187
2114
-
Gly
CCC
[ENA]
¡û
>W1610605091
LFRP01000013
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
82894
82967
+
Gly
CCC
[ENA]
¡û
>W1610670251
LKAZ01000041
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
32135
32062
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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