This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671449 (28 seq.)
>W1711043784
LRML01000003
Bacteroidota
Rufibacter roseus [LRML]
437796
437722
-
Thr
GGT
[ENA]
¡û
>W1711043825
LRMM01000011
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
48214
48288
+
Thr
GGT
[ENA]
¡û
>W131167786
ARDO01000001
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
789744
789818
+
Thr
GGT
[ENA]
¡û
>W1711167098
LVWA01000010
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
166822
166894
+
Thr
GGT
[ENA]
¡û
>WENV180014288
FPIC01146984
[FPIC] soil metagenome; Soil
74
2
-
Thr
GGT
[ENA]
¢þ
>WENV180014295
FPIC01151266
[FPIC] soil metagenome; Soil
157
229
+
Thr
GGT
[ENA]
¢þ
>W141151924
AXBK01000004
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
321912
321838
-
Thr
GGT
[ENA]
¡û
>W141152216
AXBP01000020
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
180394
180466
+
Thr
GGT
[ENA]
¡û
>WENV170985168
MWVW01034065
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
124
50
-
Thr
GGT
[ENA]
¢þ
>C191018699
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4471711
4471783
+
Thr
GGT
-
¡û
>W1910548595
FZOQ01000001
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
22506
22578
+
Thr
GGT
[ENA]
¡û
>W1911749372
QWGE01000004
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
178737
178809
+
Thr
GGT
[ENA]
¡û
>W1810173085
PJMU01000002
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
543304
543232
-
Thr
GGT
[ENA]
¡û
>W1810368042
PVZE01000001
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
22506
22578
+
Thr
GGT
[ENA]
¡û
>W1810400074
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
3272419
3272347
-
Thr
GGT
[ENA]
¡û
>W1810483278
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
4096168
4096096
-
Thr
GGT
[ENA]
¡û
>W1810503718
QBKI01000008
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
90584
90512
-
Thr
GGT
[ENA]
¡û
>W1810533383
QCZK01000005
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
59679
59751
+
Thr
GGT
[ENA]
¡û
>W1810572856
QEKI01000001
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
355901
355829
-
Thr
GGT
[ENA]
¡û
>C151055985
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1954992
1955064
+
Thr
GGT
[Ensembl]
¡û
>C151071866
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
255223
255297
+
Thr
GGT
[Ensembl]
¡û
>C161028417
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
2244081
2244155
+
Thr
GGT
[Ensembl]
¡û
>C161043249
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
2855741
2855815
+
Thr
GGT
[Ensembl]
¡û
>W1610885083
LRML01000003
Bacteroidota
Rufibacter roseus [LRML]
437796
437722
-
Thr
GGT
[ENA]
¡û
>W1610885124
LRMM01000011
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
48214
48288
+
Thr
GGT
[ENA]
¡û
>W1710562168
FOOT01000004
Bacteroidota
Pontibacter chinhatensis [FOOT]
355168
355096
-
Thr
GGT
[ENA]
¡û
>W1710597870
FTNM01000001
Bacteroidota
Pontibacter lucknowensis [FTNM]
599636
599562
-
Thr
GGT
[ENA]
¡û
>W1710600020
FTPP01000002
Bacteroidota
Pontibacter indicus [FTPP]
788835
788909
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK