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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67288 (38 seq.)
>W1710892874
LNEF01000091
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
4601
4685
+
Leu
CAA
[ENA]
¡û
>W1710892896
LNEF01000564
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
5841
5925
+
Leu
CAA
[ENA]
¡û
>W131249847
CAUA01000080
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
40959
41045
+
Leu
CAA
[ENA]
¡û
>C014797
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
1680213
1680127
-
Leu
CAA
[Ensembl]
¡û
>WENV180260084
OBEQ011167301
[OBEQ] groundwater metagenome; groundwater
121
207
+
Leu
CAA
[ENA]
¡û
>WENV181378063
OFRA01069451
[OFRA] wastewater metagenome; Lake Maggiore Verbania
398
484
+
Leu
CAA
[ENA]
¡û
>WENV170557881
CXWL01041261
[CXWL] groundwater metagenome; biofilm material
3900
3986
+
Leu
CAA
[ENA]
¡û
>WENV170557919
CXWL01042751
[CXWL] groundwater metagenome; biofilm material
2106
2192
+
Leu
CAA
[ENA]
¡û
>WENV170573299
FLYK01005842
[FLYK] hot springs metagenome; Sediment
675
589
-
Leu
CAA
[ENA]
¡û
>WENV170575286
FLYN01054808
[FLYN] hot springs metagenome; Sediment
3729
3643
-
Leu
CAA
[ENA]
¡û
>WENV170713666
LNFM01037948
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1633
1547
-
Leu
CAA
[ENA]
¡û
>C181049295
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
127598
127684
+
Leu
CAA
-
¡û
>W09103390
AAJE01000005
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
53980
53894
-
Leu
CAA
[ENA]
¡û
>W1810463538
PZZQ01000002
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
35221
35307
+
Leu
CAA
[ENA]
¡û
>W1810463628
PZZS01000002
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
235630
235716
+
Leu
CAA
[ENA]
¡û
>W1810477144
QAOO01000046
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
10162
10076
-
Leu
CAA
[ENA]
¡û
>W1810628634
QICQ01000004
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
28396
28482
+
Leu
CAA
[ENA]
¡û
>W1810658828
QJJP01000002
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
17594
17680
+
Leu
CAA
[ENA]
¡û
>W2011290194
QRCA01000013
Betaproteobacteria
Nitrosomonas sp. GH22 [QRCA]
139583
139497
-
Leu
CAA
[ENA]
¡û
>W2011618468
SLUH01000002
Betaproteobacteria
Nitrosomonas sp. Nm86 [SLUH]
174395
174309
-
Leu
CAA
[ENA]
¡û
>W2110114402
CAJNAP010000034
Betaproteobacteria
Nitrosomonas nitrosa [CAJNAP]
141244
141158
-
Leu
CAA
[ENA]
¡û
>C201003734
AP019755
Betaproteobacteria
Nitrosomonas stercoris KYUHI-S [AP019755]
391144
391058
-
Leu
CAA
-
¡û
>C231467966
CP103306
Betaproteobacteria
Nitrosomonas sp. PLL12 [CP103306]
1171761
1171675
-
Leu
CAA
-
¡û
>C11115653
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
516991
517077
+
Leu
CAA
[Ensembl]
¡û
>W1511508762
JXQM01000008
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
103088
103174
+
Leu
CAA
[ENA]
¡û
>W1610753140
LNEF01000091
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
4601
4685
+
Leu
CAA
[ENA]
¡û
>W1610753162
LNEF01000564
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
5841
5925
+
Leu
CAA
[ENA]
¡û
>W1710505670
FMTW01000001
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
35221
35307
+
Leu
CAA
[ENA]
¡û
>W1710507300
FMVD01000011
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
3679
3593
-
Leu
CAA
[ENA]
¡û
>W1710517420
FNDH01000056
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
6427
6513
+
Leu
CAA
[ENA]
¡û
>W1710528767
FNNM01000004
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
23598
23684
+
Leu
CAA
[ENA]
¡û
>W1710530703
FNOY01000034
Betaproteobacteria
Nitrosomonas halophila [FNOY]
27561
27647
+
Leu
CAA
[ENA]
¡û
>W1710531210
FNPJ01000087
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
4541
4455
-
Leu
CAA
[ENA]
¡û
>W1710531591
FNPQ01000056
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
4090
4004
-
Leu
CAA
[ENA]
¡û
>W1710541282
FNYF01000006
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
92066
91980
-
Leu
CAA
[ENA]
¡û
>W1710554034
FOID01000010
Betaproteobacteria
Nitrosomonas europaea [FOID]
32602
32688
+
Leu
CAA
[ENA]
¡û
>W1710569203
FOUF01000001
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
8170
8084
-
Leu
CAA
[ENA]
¡û
>W1710578266
FPBL01000003
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
8442
8356
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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