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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673249 (35 seq.)
>C025663
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1431009
1430935
-
Val
CAC
-
¡û
>C025783
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1369546
1369620
+
Val
CAC
[Ensembl]
¡û
>W141082680
AUNF01000093
Thermotogota
Thermotoga sp. A7A [AUNF]
22496
22570
+
Val
CAC
[ENA]
¡û
>WENV181408019
OGCH01000393
[OGCH] hot springs metagenome; hot springs
2282
2208
-
Val
CAC
[ENA]
¢þ
>C08010905
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1339013
1338942
-
Val
CAC
[Ensembl]
¡û
>WENV170676154
LDZR01001251
[LDZR] terrestrial metagenome; oil reservoir sample K2
22463
22537
+
Val
CAC
[ENA]
¢þ
>WENV170676751
LDZS01002154
[LDZS] terrestrial metagenome; oil reservoir sample K3
1021
947
-
Val
CAC
[ENA]
¢þ
>W09106578
AAWB01000038
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
6554
6480
-
Val
CAC
[ENA]
¡û
>W09107428
ABIJ01000007
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
18916
18990
+
Val
CAC
[ENA]
¡û
>W09112213
ABXR01000008
Thermotogota
Marinitoga piezophila KA3 [ABXR]
60170
60096
-
Val
CAC
[ENA]
¡û
>C141011524
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1384242
1384316
+
Val
CAC
-
¡û
>W1910635493
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
471186
471112
-
Val
CAC
[ENA]
¡û
>C151004273
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1409629
1409703
+
Val
CAC
[Ensembl]
¡û
>C151004315
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1361518
1361592
+
Val
CAC
[Ensembl]
¡û
>C151074623
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1420996
1420922
-
Val
CAC
[Ensembl]
¡û
>C151076977
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1431024
1430950
-
Val
CAC
[Ensembl]
¡û
>C151077023
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1431024
1430950
-
Val
CAC
[Ensembl]
¡û
>W10105855
ACXW01000009
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
2560
2486
-
Val
CAC
[ENA]
¡û
>C10113495
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1392810
1392884
+
Val
CAC
[Ensembl]
¡û
>W11108175
ACXW01000009
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
2560
2486
-
Val
CAC
[ENA]
¡û
>W11180807
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
78523
78449
-
Val
CAC
[ENA]
¡û
>W121062196
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
290276
290350
+
Val
CAC
[ENA]
¡û
>C131012513
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1431026
1430952
-
Val
CAC
-
¡û
>W1610540328
JSFG01000008
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
32702
32776
+
Val
CAC
[ENA]
¡û
>W1610540386
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
88836
88910
+
Val
CAC
[ENA]
¡û
>W1610540420
JSFI01000006
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
88808
88882
+
Val
CAC
[ENA]
¡û
>W1610540494
JSFJ01000016
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
2557
2483
-
Val
CAC
[ENA]
¡û
>W1610612900
LGFG01000003
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
22463
22537
+
Val
CAC
[ENA]
¡û
>W1610613141
LGFM01000023
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1021
947
-
Val
CAC
[ENA]
¡û
>W1710643349
JSFG01000008
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
32702
32776
+
Val
CAC
[ENA]
¡û
>W1710643407
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
88836
88910
+
Val
CAC
[ENA]
¡û
>W1710643441
JSFI01000006
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
88808
88882
+
Val
CAC
[ENA]
¡û
>W1710643515
JSFJ01000016
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
2557
2483
-
Val
CAC
[ENA]
¡û
>W1710734182
LGFG01000003
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
22463
22537
+
Val
CAC
[ENA]
¡û
>W1710734348
LGFM01000023
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1021
947
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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