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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673251 (37 seq.)
>C025669
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
510879
510805
-
Gly
GCC
-
¡û
>C025772
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
424629
424703
+
Gly
GCC
[Ensembl]
¡û
>W141070751
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
54439
54513
+
Gly
GCC
[ENA]
¡û
>W141082659
AUNF01000047
Thermotogota
Thermotoga sp. A7A [AUNF]
27754
27828
+
Gly
GCC
[ENA]
¡û
>WENV181409057
OGCH01041006
[OGCH] hot springs metagenome; hot springs
80
6
-
Gly
GCC
[ENA]
¢þ
>C08010883
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
442701
442775
+
Gly
GCC
[Ensembl]
¡û
>WENV170676165
LDZR01001289
[LDZR] terrestrial metagenome; oil reservoir sample K2
8837
8763
-
Gly
GCC
[ENA]
¢þ
>WENV170676546
LDZS01001172
[LDZS] terrestrial metagenome; oil reservoir sample K3
1827
1901
+
Gly
GCC
[ENA]
¢þ
>W09106575
AAWB01000026
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
5429
5355
-
Gly
GCC
[ENA]
¡û
>W09107444
ABIJ01000013
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
5284
5210
-
Gly
GCC
[ENA]
¡û
>W09112235
ABXR01000024
Thermotogota
Marinitoga piezophila KA3 [ABXR]
21253
21327
+
Gly
GCC
[ENA]
¡û
>C141011514
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
434737
434811
+
Gly
GCC
-
¡û
>C09110629
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
177990
178064
+
Gly
GCC
[Ensembl]
¡û
>W1910635455
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
61436
61362
-
Gly
GCC
[ENA]
¡û
>W1910635510
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
279464
279390
-
Gly
GCC
[ENA]
¡û
>C151004259
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
442576
442650
+
Gly
GCC
[Ensembl]
¡û
>C151004305
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
434015
434089
+
Gly
GCC
[Ensembl]
¡û
>C151030619
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
455436
455510
+
Gly
GCC
[Ensembl]
¡û
>C151074629
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
510885
510811
-
Gly
GCC
[Ensembl]
¡û
>C151076983
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
510885
510811
-
Gly
GCC
[Ensembl]
¡û
>C151077029
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
510885
510811
-
Gly
GCC
[Ensembl]
¡û
>W10105839
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86143
86069
-
Gly
GCC
[ENA]
¡û
>C10113518
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
265142
265068
-
Gly
GCC
[Ensembl]
¡û
>W11108159
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86143
86069
-
Gly
GCC
[ENA]
¡û
>W11180779
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
822636
822710
+
Gly
GCC
[ENA]
¡û
>W121062171
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
54319
54245
-
Gly
GCC
[ENA]
¡û
>C131012519
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
510885
510811
-
Gly
GCC
-
¡û
>W1610540344
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15281
15355
+
Gly
GCC
[ENA]
¡û
>W1610540400
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276519
276593
+
Gly
GCC
[ENA]
¡û
>W1610540435
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252848
252922
+
Gly
GCC
[ENA]
¡û
>W1610540480
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86296
86222
-
Gly
GCC
[ENA]
¡û
>W1610612911
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8837
8763
-
Gly
GCC
[ENA]
¡û
>W1710643365
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15281
15355
+
Gly
GCC
[ENA]
¡û
>W1710643421
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276519
276593
+
Gly
GCC
[ENA]
¡û
>W1710643456
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252848
252922
+
Gly
GCC
[ENA]
¡û
>W1710643501
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86296
86222
-
Gly
GCC
[ENA]
¡û
>W1710734193
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8837
8763
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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