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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673588 (22 seq.)
>W1710806107
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
260693
260619
-
Cys
GCA
[ENA]
¡û
>W1711317493
MAXI01000107
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
2576
2502
-
Cys
GCA
[ENA]
¡û
>WENV183706868
PDWI01005781
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15570
15644
+
Cys
GCA
[ENA]
¢þ
>WENV183721804
PDWJ01088312
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20
94
+
Cys
GCA
[ENA]
¢þ
>WENV183746853
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
108
182
+
Cys
GCA
[ENA]
¢þ
>WENV183747498
PPCM01003486
[PPCM] marine sediment metagenome; marine sediment
4275
4349
+
Cys
GCA
[ENA]
¢þ
>WENV170418653
CEUM01058685
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
52
-
Cys
GCA
[ENA]
¢þ
>WENV170437543
CEUU01047616
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
54
-
Cys
GCA
[ENA]
¢þ
>WENV170901445
MDTD01170735
[MDTD] marine metagenome; seawater
31344
31418
+
Cys
GCA
[ENA]
¢þ
>C181226968
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
144310
144384
+
Cys
GCA
-
¡û
>W09117983
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
98255
98329
+
Cys
GCA
[ENA]
¡û
>W141779016
JONL01000006
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
269832
269758
-
Cys
GCA
[ENA]
¡û
>C09104250
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2862825
2862751
-
Cys
GCA
[Ensembl]
¡û
>W1911738007
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
198525
198599
+
Cys
GCA
[ENA]
¡û
>W10111394
ADDI01000025
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34988
34914
-
Cys
GCA
[ENA]
¡û
>C11106873
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2121259
2121185
-
Cys
GCA
[Ensembl]
¡û
>W11114337
ADDI01000025
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34988
34914
-
Cys
GCA
[ENA]
¡û
>W11149113
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
127691
127617
-
Cys
GCA
[ENA]
¡û
>C121009007
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
785366
785292
-
Cys
GCA
[Ensembl]
¡û
>C161068249
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2412891
2412965
+
Cys
GCA
[Ensembl]
¡û
>C131017904
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
111191
111265
+
Cys
GCA
[Ensembl]
¡û
>W1710602173
FUYA01000001
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
566782
566708
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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