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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.674349 (39 seq.)
>W1710863843
LMFL01000010
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
95913
95987
+
Val
GAC
[ENA]
¡û
>W1710865533
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
154682
154608
-
Val
GAC
[ENA]
¡û
>W1710873815
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
56290
56364
+
Val
GAC
[ENA]
¡û
>W1710876085
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
50526
50600
+
Val
GAC
[ENA]
¡û
>W1710877327
LMPZ01000006
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
17873
17799
-
Val
GAC
[ENA]
¡û
>W1711407974
MGLM01000157
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
1293
1219
-
Val
GAC
[ENA]
¡û
>C171094861
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
3266933
3267007
+
Val
GAC
-
¡û
>W131052443
AMYY01000052
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
9413
9487
+
Val
GAC
[ENA]
¡û
>WENV180024250
FTIG01000018
[FTIG] metagenome; soil
23
97
+
Val
GAC
[ENA]
¢þ
>WENV180030720
FTJN01003225
[FTJN] metagenome; soil
74790
74864
+
Val
GAC
[ENA]
¢þ
>WENV181371069
OFQU01016265
[OFQU] wastewater metagenome; Exp Tend CN 90WW
161
87
-
Val
GAC
[ENA]
¢þ
>WENV181384387
OFRI01000523
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2146
2072
-
Val
GAC
[ENA]
¢þ
>WENV181387189
OFRL01056546
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
496
422
-
Val
GAC
[ENA]
¢þ
>W08010810
ABRU01000010
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
160709
160783
+
Val
GAC
[ENA]
¡û
>WENV170712382
LNFM01012724
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4322
4396
+
Val
GAC
[ENA]
¢þ
>WENV170712739
LNFM01017069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
78
4
-
Val
GAC
[ENA]
¢þ
>WENV170713860
LNFM01044861
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14
88
+
Val
GAC
[ENA]
¢þ
>C181056262
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
999970
999896
-
Val
GAC
-
¡û
>C191166099
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
912654
912728
+
Val
GAC
-
¡û
>W141712457
JMQR01000118
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
5414
5488
+
Val
GAC
[ENA]
¡û
>W141819014
JQLZ01000001
Alphaproteobacteria
Caulobacter henricii [JQLZ]
863857
863783
-
Val
GAC
[ENA]
¡û
>W1910725212
MGLJ01000083
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
687
761
+
Val
GAC
[ENA]
¡û
>W1910725294
MGLL01000184
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
10721
10647
-
Val
GAC
[ENA]
¡û
>W10109833
ADBM01000001
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
473555
473481
-
Val
GAC
[ENA]
¡û
>C10102227
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
745731
745657
-
Val
GAC
[Ensembl]
¡û
>W11112270
ADBM01000001
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
473555
473481
-
Val
GAC
[ENA]
¡û
>W1511489458
JWSY01000004
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
52541
52615
+
Val
GAC
[ENA]
¡û
>W1511547881
JZRG01000015
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
5205
5131
-
Val
GAC
[ENA]
¡û
>C161049338
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
623491
623565
+
Val
GAC
[Ensembl]
¡û
>C161089121
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
2201369
2201295
-
Val
GAC
[Ensembl]
¡û
>W1610074235
BCWM01000019
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
48143
48217
+
Val
GAC
[ENA]
¡û
>W1610726189
LMFL01000010
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
95913
95987
+
Val
GAC
[ENA]
¡û
>W1610727879
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
154682
154608
-
Val
GAC
[ENA]
¡û
>W1610736161
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
56290
56364
+
Val
GAC
[ENA]
¡û
>W1610738431
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
50526
50600
+
Val
GAC
[ENA]
¡û
>W1610739673
LMPZ01000006
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
17873
17799
-
Val
GAC
[ENA]
¡û
>W1710071353
BCWM01000019
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
48143
48217
+
Val
GAC
[ENA]
¡û
>W1710084635
BDMM01000006
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
50750
50824
+
Val
GAC
[ENA]
¡û
>W1710527026
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
1472790
1472716
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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