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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67505 (74 seq.)
>W1711229486
LXYM01000008
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
26763
26849
+
Leu
TAA
[ENA]
¡û
>W1711621320
MPDA01000001
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
1092439
1092353
-
Leu
TAA
[ENA]
¡û
>w011982
AALZ01000001
Alphaproteobacteria
Sulfitobacter sp. NAS-14.1 [AALZ]
7265
7177
-
Leu
TAA
[ENA]
¡û
>w011942
AALY01000001
Alphaproteobacteria
Roseovarius nubinhibens ISM [AALY]
1714585
1714497
-
Leu
TAA
[ENA]
¡û
>w011778
AALV01000001
Alphaproteobacteria
Sulfitobacter sp. EE-36 [AALV]
52816
52728
-
Leu
TAA
[ENA]
¡û
>WENV180067639
MPLZ02007244
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
566
480
-
Leu
TAA
[ENA]
¡û
>WENV182542975
OJAZ01011994
[OJAZ] seawater metagenome; Sea water
965
1051
+
Leu
TAA
[ENA]
¡û
>WENV182543574
OJBB01005402
[OJBB] seawater metagenome; Sea water
282
196
-
Leu
TAA
[ENA]
¡û
>WENV182544067
OJBE01000167
[OJBE] seawater metagenome; Sea water
16595
16681
+
Leu
TAA
[ENA]
¡û
>WENV182576228
OJFX01006120
[OJFX] seawater metagenome; Sea water
443
529
+
Leu
TAA
[ENA]
¡û
>WENV182588063
OJHO01001918
[OJHO] seawater metagenome; Sea water
453
367
-
Leu
TAA
[ENA]
¡û
>W141290190
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
1558818
1558904
+
Leu
TAA
[ENA]
¡û
>WENV183055340
OLGX01003672
[OLGX] seawater metagenome; Sea water
1284
1370
+
Leu
TAA
[ENA]
¡û
>WENV170015294
AZIG01000823
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
1930
1844
-
Leu
TAA
[ENA]
¡û
>WENV170131612
CENS01108640
[CENS] marine metagenome genome assembly TARA_022_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
442
528
+
Leu
TAA
[ENA]
¡û
>WENV170256828
CEQX01136004
[CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
694
608
-
Leu
TAA
[ENA]
¡û
>WENV170477746
CEVJ01115937
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
416
-
Leu
TAA
[ENA]
¡û
>WENV170571191
FLOH01000089
[FLOH] marine metagenome; water
232655
232741
+
Leu
TAA
[ENA]
¡û
>WENV170705256
LLEQ01001456
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
304
390
+
Leu
TAA
[ENA]
¡û
>WENV170762236
LUMW01002768
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
4261
4347
+
Leu
TAA
[ENA]
¡û
>WENV170783007
MAAC01012773
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3549
3635
+
Leu
TAA
[ENA]
¡û
>WENV170783876
MAAC01019332
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
18596
18510
-
Leu
TAA
[ENA]
¡û
>C191182589
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
281818
281904
+
Leu
TAA
-
¡û
>W141807906
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
2053147
2053061
-
Leu
TAA
[ENA]
¡û
>W1810424145
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
2053147
2053061
-
Leu
TAA
[ENA]
¡û
>W1810494783
QBFF01000008
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
35193
35107
-
Leu
TAA
[ENA]
¡û
>W2010406001
FWFJ01000040
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
300
214
-
Leu
TAA
[ENA]
¡û
>W2010668129
JACBZG010000002
Alphaproteobacteria
Sulfitobacter geojensis DSM 101063 [JACBZG]
234439
234525
+
Leu
TAA
[ENA]
¡û
>W2010727436
JACIFU010000004
Alphaproteobacteria
Sulfitobacter noctilucicola DSM 101015 [JACIFU]
35164
35250
+
Leu
TAA
[ENA]
¡û
>W2011696392
SULI01000004
Alphaproteobacteria
Pelagicola litoralis CL-ES2 [SULI]
57051
56965
-
Leu
TAA
[ENA]
¡û
>ENV09003955
ADIF01002464
Marine metagenome apSum_C1
632
546
-
Leu
TAA
[ENA]
¡û
>W2110468475
JAFBRH010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-96 [JAFBRH]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468517
JAFBRI010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-95 [JAFBRI]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468559
JAFBRJ010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-93 [JAFBRJ]
1434191
1434105
-
Leu
TAA
[ENA]
¡û
>W2110468601
JAFBRK010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-89 [JAFBRK]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468643
JAFBRL010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-85 [JAFBRL]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468685
JAFBRM010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-84 [JAFBRM]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468727
JAFBRN010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-80 [JAFBRN]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468769
JAFBRO010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-79 [JAFBRO]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468811
JAFBRP010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-77 [JAFBRP]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468853
JAFBRQ010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-76 [JAFBRQ]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468895
JAFBRR010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-75 [JAFBRR]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468937
JAFBRS010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-74 [JAFBRS]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110468979
JAFBRT010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-73 [JAFBRT]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469021
JAFBRU010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-72 [JAFBRU]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469063
JAFBRV010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-71 [JAFBRV]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469105
JAFBRW010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-119 [JAFBRW]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469147
JAFBRX010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-117 [JAFBRX]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469189
JAFBRY010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-116 [JAFBRY]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469231
JAFBRZ010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-115 [JAFBRZ]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469273
JAFBSA010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-107 [JAFBSA]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469315
JAFBSB010000001
Alphaproteobacteria
Sulfitobacter geojensis TR60-106 [JAFBSB]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469357
JAFBSC010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-8 [JAFBSC]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469389
JAFBSD010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-88 [JAFBSD]
228375
228461
+
Leu
TAA
[ENA]
¡û
>W2110469431
JAFBSE010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-63 [JAFBSE]
228375
228461
+
Leu
TAA
[ENA]
¡û
>W2110469481
JAFBSF010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-62 [JAFBSF]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469515
JAFBSG010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-33 [JAFBSG]
228375
228461
+
Leu
TAA
[ENA]
¡û
>W2110469558
JAFBSH010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-31 [JAFBSH]
607729
607815
+
Leu
TAA
[ENA]
¡û
>W2110469607
JAFBSI010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-1 [JAFBSI]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469641
JAFBSJ010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-19 [JAFBSJ]
228375
228461
+
Leu
TAA
[ENA]
¡û
>W2110469689
JAFBSK010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-117 [JAFBSK]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469731
JAFBSL010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-116 [JAFBSL]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110469773
JAFBSM010000001
Alphaproteobacteria
Sulfitobacter geojensis MP20-100 [JAFBSM]
1434200
1434114
-
Leu
TAA
[ENA]
¡û
>W2110612572
JAHKQK010000007
Alphaproteobacteria
Roseovarius nubinhibens B2R09 [JAHKQK]
118909
118823
-
Leu
TAA
[ENA]
¡û
>C201220519
CP049037
Alphaproteobacteria
Pseudohalocynthiibacter aestuariivivens RR4-35 [CP049037]
1535174
1535088
-
Leu
TAA
-
¡û
>C211206648
CP065429
Alphaproteobacteria
Sulfitobacter sp. B30-2 [CP065429]
2442095
2442009
-
Leu
TAA
-
¡û
>C231127674
CP072613
Alphaproteobacteria
Sulfitobacter sp. CB2047 [CP072613]
1211049
1211135
+
Leu
TAA
-
¡û
>C231169820
CP081153
Alphaproteobacteria
Aliiroseovarius sp. M344 [CP081153]
1030907
1030993
+
Leu
TAA
-
¡û
>C231201464
CP084959
Alphaproteobacteria
Sulfitobacter pontiacus DSM 110277 [CP084959]
2532601
2532515
-
Leu
TAA
-
¡û
>C241011783
AP027373
Alphaproteobacteria
Sulfitobacter pontiacus BL28 [AP027373]
2471854
2471768
-
Leu
TAA
-
¡û
>C241135974
CP049344
Alphaproteobacteria
Sulfitobacter pontiacus S1704 [CP049344]
2559623
2559537
-
Leu
TAA
-
¡û
>W1511479503
JWIF01000056
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
428535
428621
+
Leu
TAA
[ENA]
¡û
>W1610630917
LIKT01000023
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
584
498
-
Leu
TAA
[ENA]
¡û
>W1611013356
LXYM01000008
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
26763
26849
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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