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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.675159 (48 seq.)
>W1710979366
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
186988
186914
-
Asn
GTT
[ENA]
¡û
>W1710979367
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
186873
186799
-
Asn
GTT
[ENA]
¡û
>W1711484280
MKCO01000012
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
469
395
-
Asn
GTT
[ENA]
¡û
>W1711484281
MKCO01000012
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
367
293
-
Asn
GTT
[ENA]
¡û
>W1711484282
MKCO01000012
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
265
191
-
Asn
GTT
[ENA]
¡û
>W1711484283
MKCO01000012
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
163
89
-
Asn
GTT
[ENA]
¡û
>C171088979
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1948566
1948492
-
Asn
GTT
-
¡û
>C171088980
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1948450
1948376
-
Asn
GTT
-
¡û
>C171088981
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1948342
1948268
-
Asn
GTT
-
¡û
>WENV183715475
PDWI01243223
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21
95
+
Asn
GTT
[ENA]
¢þ
>WENV183718869
PDWJ01007222
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2203
2129
-
Asn
GTT
[ENA]
¢þ
>WENV183718870
PDWJ01007222
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2094
2020
-
Asn
GTT
[ENA]
¢þ
>WENV170635312
JDSF01001545
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
53
127
+
Asn
GTT
[ENA]
¢þ
>WENV170656000
JTFN01112599
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
333
407
+
Asn
GTT
[ENA]
¢þ
>WENV170704247
LLEJ01000601
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3418
3492
+
Asn
GTT
[ENA]
¢þ
>WENV170704248
LLEJ01000601
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3526
3600
+
Asn
GTT
[ENA]
¢þ
>WENV170704899
LLEN01010956
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
85
159
+
Asn
GTT
[ENA]
¢þ
>WENV170780800
MAAB01023204
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
38
112
+
Asn
GTT
[ENA]
¢þ
>WENV170780801
MAAB01023204
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
148
222
+
Asn
GTT
[ENA]
¢þ
>WENV170781927
MAAC01004643
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4001
3927
-
Asn
GTT
[ENA]
¢þ
>WENV170781928
MAAC01004643
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3889
3815
-
Asn
GTT
[ENA]
¢þ
>WENV170933791
MDTG01226656
[MDTG] marine metagenome; seawater
16
90
+
Asn
GTT
[ENA]
¢þ
>C181196936
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
897107
897181
+
Asn
GTT
-
¡û
>C181196937
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
897218
897292
+
Asn
GTT
-
¡û
>C191147200
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1729013
1728939
-
Asn
GTT
-
¡û
>C191147201
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1728895
1728821
-
Asn
GTT
-
¡û
>C191147202
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1728790
1728716
-
Asn
GTT
-
¡û
>W1911426238
NXIE01000004
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
284691
284765
+
Asn
GTT
[ENA]
¡û
>W1911426239
NXIE01000004
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
284803
284877
+
Asn
GTT
[ENA]
¡û
>W1911576134
PDJU01000002
Campylobacterota
Arcobacter sp. F155 [PDJU]
122078
122004
-
Asn
GTT
[ENA]
¡û
>W1911576135
PDJU01000002
Campylobacterota
Arcobacter sp. F155 [PDJU]
121960
121886
-
Asn
GTT
[ENA]
¡û
>W1911576136
PDJU01000002
Campylobacterota
Arcobacter sp. F155 [PDJU]
121854
121780
-
Asn
GTT
[ENA]
¡û
>W1911576568
PDKE01000001
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
129874
129800
-
Asn
GTT
[ENA]
¡û
>W1911576569
PDKE01000001
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
129756
129682
-
Asn
GTT
[ENA]
¡û
>W1911576570
PDKE01000001
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
129648
129574
-
Asn
GTT
[ENA]
¡û
>W1911576627
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
553363
553437
+
Asn
GTT
[ENA]
¡û
>W1911576628
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
553474
553548
+
Asn
GTT
[ENA]
¡û
>W1911576861
PDKL01000002
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
277542
277616
+
Asn
GTT
[ENA]
¡û
>W1911576901
PDKM01000001
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
247521
247595
+
Asn
GTT
[ENA]
¡û
>W1911576902
PDKM01000001
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
247632
247706
+
Asn
GTT
[ENA]
¡û
>W1911576978
PDKN01000008
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
116370
116444
+
Asn
GTT
[ENA]
¡û
>W1911576979
PDKN01000008
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
116485
116559
+
Asn
GTT
[ENA]
¡û
>W1810462586
PZYW01000013
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
49289
49363
+
Asn
GTT
[ENA]
¡û
>W1810462587
PZYW01000013
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
49391
49465
+
Asn
GTT
[ENA]
¡û
>W1610835357
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
186988
186914
-
Asn
GTT
[ENA]
¡û
>W1610835358
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
186873
186799
-
Asn
GTT
[ENA]
¡û
>W1710082862
BDIR01000008
Campylobacterota
Arcobacter sp. LA11 [BDIR]
40547
40621
+
Asn
GTT
[ENA]
¡û
>W1710082863
BDIR01000008
Campylobacterota
Arcobacter sp. LA11 [BDIR]
40659
40733
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK