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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.675932 (26 seq.)
>W1711188727
LWQS01000034
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
12233
12159
-
Met
CAT
[ENA]
¡û
>W1711188732
LWQS01000038
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
127
201
+
Met
CAT
[ENA]
¡û
>W1711188754
LWQS01000071
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
127
201
+
Met
CAT
[ENA]
¡û
>w019629
AAUI01000037
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
31408
31337
-
Met
CAT
[ENA]
¡û
>w001401
AAAH02000012
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
62265
62339
+
Met
CAT
[ENA]
¡û
>w001377
AAAH02000002
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
291655
291579
-
Met
CAT
[ENA]
¡û
>WENV181409981
OGCI01001078
[OGCI] hot springs metagenome; Hot spring water
9871
9945
+
fMet
CAT
[ENA]
¢þ
>W08009462
ABPG01000007
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
444
518
+
Met
CAT
[ENA]
¡û
>W08009474
ABPG01000013
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
58798
58727
-
Met
CAT
[ENA]
¡û
>W141220452
AZXV01000001
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
1124457
1124383
-
Met
CAT
[ENA]
¡û
>W141220469
AZXV01000003
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
1754898
1754972
+
Met
CAT
[ENA]
¡û
>C08002390
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
2264996
2265070
+
Met
CAT
[Ensembl]
¡û
>C08002415
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
3500842
3500771
-
Met
CAT
[Ensembl]
¡û
>WENV170000769
AFSR01003801
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
76
2
-
Met
CAT
[ENA]
¢þ
>WENV170573679
FLYL01016142
[FLYL] hot springs metagenome; Sediment
75
1
-
Met
CAT
[ENA]
¢þ
>W141804728
JPIM01000084
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
202
276
+
Met
CAT
[ENA]
¡û
>W141804742
JPIM01000172
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
5800
5874
+
Met
CAT
[ENA]
¡û
>W1910654093
LYXE01000188
Chloroflexota
Candidatus Chloroploca asiatica asiatica B7-9 [LYXE]
124643
124717
+
Met
CAT
[ENA]
¡û
>C09102709
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
1659878
1659804
-
Met
CAT
[Ensembl]
¡û
>C09103212
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
2260432
2260506
+
Met
CAT
[Ensembl]
¡û
>C09103237
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
3495856
3495782
-
Met
CAT
[Ensembl]
¡û
>W1911189736
NQWI01000005
Chloroflexota
Candidatus Viridilinea mediisalina mediisalina Kir15-3F [NQWI]
64765
64691
-
Met
CAT
[ENA]
¡û
>WENV11101112
AFSR01003801
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
76
2
-
Met
CAT
[ENA]
¡û
>W1610990846
LWQS01000034
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
12233
12159
-
Met
CAT
[ENA]
¡û
>W1610990851
LWQS01000038
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
127
201
+
Met
CAT
[ENA]
¡û
>W1610990873
LWQS01000071
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
127
201
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK