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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67633 (94 seq.)
>W1711126409
LUOO01000021
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
141473
141559
+
Leu
CAG
[ENA]
¡û
>W1711126462
LUOP01000019
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
201505
201591
+
Leu
CAG
[ENA]
¡û
>C171032424
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
1630892
1630978
+
Leu
CAG
-
¡û
>C171035424
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
1445699
1445785
+
Leu
CAG
-
¡û
>w023614
AAYA01000001
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
29760
29672
-
Leu
CAG
[ENA]
¡û
>w014831
AAOT01000001
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
50032
50118
+
Leu
CAG
[ENA]
¡û
>WENV180017321
FSWT01000142
[FSWT] metagenome; soil
5720
5634
-
Leu
CAG
[ENA]
¡û
>WENV180021627
FTEX01000064
[FTEX] metagenome; soil
4043
3957
-
Leu
CAG
[ENA]
¡û
>WENV180021866
FTFC01003284
[FTFC] metagenome; soil
2385
2299
-
Leu
CAG
[ENA]
¡û
>WENV180022154
FTFR01000696
[FTFR] metagenome; soil
2136
2050
-
Leu
CAG
[ENA]
¡û
>WENV180022590
FTGK01000958
[FTGK] metagenome; soil
22236
22321
+
Leu
CAG
[ENA]
¡û
>WENV180022591
FTGK01000958
[FTGK] metagenome; soil
85
-1
-
Leu
CAG
[ENA]
¡û
>WENV180022841
FTGV01000118
[FTGV] metagenome; soil
1200
1114
-
Leu
CAG
[ENA]
¡û
>WENV180023095
FTHI01001264
[FTHI] metagenome; soil
11
97
+
Leu
CAG
[ENA]
¡û
>WENV180023698
FTIE01021979
[FTIE] metagenome; soil
73
159
+
Leu
CAG
[ENA]
¡û
>WENV180025032
FTIL01035012
[FTIL] metagenome; soil
295
209
-
Leu
CAG
[ENA]
¡û
>WENV180026575
FTIU01003511
[FTIU] metagenome; soil
3548
3462
-
Leu
CAG
[ENA]
¡û
>WENV180026576
FTIU01003511
[FTIU] metagenome; soil
3124
3038
-
Leu
CAG
[ENA]
¡û
>WENV180026599
FTIU01004653
[FTIU] metagenome; soil
1758
1844
+
Leu
CAG
[ENA]
¡û
>WENV180028184
FTJA01002246
[FTJA] metagenome; soil
2449
2535
+
Leu
CAG
[ENA]
¡û
>WENV180029774
FTJL01004555
[FTJL] metagenome; soil
2847
2933
+
Leu
CAG
[ENA]
¡û
>WENV180031936
FTJU01001756
[FTJU] metagenome; soil
29527
29613
+
Leu
CAG
[ENA]
¡û
>WENV180032133
FTJU01243445
[FTJU] metagenome; soil
5768
5682
-
Leu
CAG
[ENA]
¡û
>WENV180032242
FTJX01115451
[FTJX] metagenome; soil
232
146
-
Leu
CAG
[ENA]
¡û
>WENV180032403
FTJZ01076037
[FTJZ] metagenome; soil
321
235
-
Leu
CAG
[ENA]
¡û
>WENV180033887
FTKM01000005
[FTKM] metagenome; soil
18679
18765
+
Leu
CAG
[ENA]
¡û
>WENV180034182
FTKP01004179
[FTKP] metagenome; soil
14478
14564
+
Leu
CAG
[ENA]
¡û
>WENV180035461
FTKZ01019604
[FTKZ] metagenome; soil
161
247
+
Leu
CAG
[ENA]
¡û
>WENV180035468
FTKZ01027815
[FTKZ] metagenome; soil
80
166
+
Leu
CAG
[ENA]
¡û
>WENV180035470
FTKZ01028959
[FTKZ] metagenome; soil
146
232
+
Leu
CAG
[ENA]
¡û
>WENV180035487
FTKZ01072058
[FTKZ] metagenome; soil
112
26
-
Leu
CAG
[ENA]
¡û
>WENV180035603
FTLA01060827
[FTLA] metagenome; soil
513
427
-
Leu
CAG
[ENA]
¡û
>WENV181234093
OFET01002662
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1610
1524
-
Leu
CAG
[ENA]
¡û
>W141151387
AXBA01000020
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
74537
74623
+
Leu
CAG
[ENA]
¡û
>WENV183697938
OUNK010439224
[OUNK] metagenome; soil
2031
2117
+
Leu
CAG
[ENA]
¡û
>WENV183705436
PDWI01001547
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16828
16914
+
Leu
CAG
[ENA]
¡û
>WENV183710555
PDWI01048946
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3511
3425
-
Leu
CAG
[ENA]
¡û
>WENV183716816
PDWJ01000208
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
57998
57912
-
Leu
CAG
[ENA]
¡û
>WENV183721587
PDWJ01076035
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1042
956
-
Leu
CAG
[ENA]
¡û
>WENV170229653
CEQG01144926
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
270
184
-
Leu
CAG
[ENA]
¡û
>WENV170478720
CEVK01085188
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
52
-
Leu
CAG
[ENA]
¡û
>WENV170727377
LULE01000009
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
201505
201591
+
Leu
CAG
[ENA]
¡û
>WENV170734866
LULK01026405
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
687
773
+
Leu
CAG
[ENA]
¡û
>WENV170739235
LULQ01000022
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
141473
141559
+
Leu
CAG
[ENA]
¡û
>WENV170761201
LUMU01018389
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
462
548
+
Leu
CAG
[ENA]
¡û
>WENV170892953
MDTD01045475
[MDTD] marine metagenome; seawater
37684
37770
+
Leu
CAG
[ENA]
¡û
>C181060508
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
197215
197301
+
Leu
CAG
-
¡û
>C191005621
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
2287289
2287375
+
Leu
CAG
-
¡û
>W09133882
ACQR01000034
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
27356
27270
-
Leu
CAG
[ENA]
¡û
>W1910443345
FWFZ01000023
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
38938
38852
-
Leu
CAG
[ENA]
¡û
>W1911281148
NTHN01000059
Alphaproteobacteria
Yangia sp. SAOS 153D [NTHN]
1161
1247
+
Leu
CAG
[ENA]
¡û
>W1911747153
QWDA01000004
Alphaproteobacteria
Rhodobacteraceae bacterium IMCC 34051 [QWDA]
51949
52035
+
Leu
CAG
[ENA]
¡û
>W1810503487
QBKE01000001
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
924645
924559
-
Leu
CAG
[ENA]
¡û
>W1810503942
QBKN01000004
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
173224
173310
+
Leu
CAG
[ENA]
¡û
>W1810733768
QOHR01000039
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
10089
10175
+
Leu
CAG
[ENA]
¡û
>W2010406709
FWFZ01000023
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
38938
38852
-
Leu
CAG
[ENA]
¡û
>W2010469681
JAAGOU010000002
Alphaproteobacteria
Yangia sp. PrR002 [JAAGOU]
648
562
-
Leu
CAG
[ENA]
¡û
>W2010469947
JAAGOZ010000017
Alphaproteobacteria
Yangia sp. PrR007 [JAAGOZ]
850
764
-
Leu
CAG
[ENA]
¡û
>W2011074454
NTHN01000059
Alphaproteobacteria
Yangia sp. SAOS 153D [NTHN]
1161
1247
+
Leu
CAG
[ENA]
¡û
>W2011315765
QWDA01000004
Alphaproteobacteria
Rhodobacteraceae bacterium IMCC 34051 [QWDA]
51949
52035
+
Leu
CAG
[ENA]
¡û
>W2011555406
SELP01000003
Alphaproteobacteria
Loktanella sp. IMCC34160 [SELP]
170097
170011
-
Leu
CAG
[ENA]
¡û
>W2011620077
SLVM01000002
Alphaproteobacteria
Rhodovulum steppense DSM 21153 [SLVM]
24425
24511
+
Leu
CAG
[ENA]
¡û
>W2011687999
SSBC01000017
Alphaproteobacteria
Asticcacaulis sp. 3.1105 [SSBC]
87303
87217
-
Leu
CAG
[ENA]
¡û
>W2011754101
SZWJ01000003
Alphaproteobacteria
Caulobacter sp. SSI4214 [SZWJ]
3341
3427
+
Leu
CAG
[ENA]
¡û
>W2012015025
VFFF01000001
Alphaproteobacteria
Rhodobacteraceae bacterium SM1903 [VFFF]
2485265
2485351
+
Leu
CAG
[ENA]
¡û
>W2012106090
VOPH01000002
Alphaproteobacteria
Pseudooceanicola sp. CAU 1508 [VOPH]
354781
354867
+
Leu
CAG
[ENA]
¡û
>W2110019320
BMCT01000001
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
590292
590206
-
Leu
CAG
[ENA]
¡û
>W2110022078
BMEZ01000004
Alphaproteobacteria
Roseivivax pacificus CGMCC 1.12410 [BMEZ]
173197
173283
+
Leu
CAG
[ENA]
¡û
>W2110023803
BMGI01000001
Alphaproteobacteria
Maritimibacter lacisalsi CGMCC 1.12922 [BMGI]
140570
140484
-
Leu
CAG
[ENA]
¡û
>W2110049979
BMZB01000001
Alphaproteobacteria
Asticcacaulis endophyticus KCTC 32296 [BMZB]
263675
263761
+
Leu
CAG
[ENA]
¡û
>W2110423453
JAEKJU010000001
Alphaproteobacteria
Salipiger thiooxidans SY-1-11 [JAEKJU]
314435
314521
+
Leu
CAG
[ENA]
¡û
>W2110639238
JAHQZS010000005
Alphaproteobacteria
Rhodobacteraceae bacterium ASV31 [JAHQZS]
203795
203709
-
Leu
CAG
[ENA]
¡û
>W2110650629
JAHUZF010000007
Alphaproteobacteria
Maritimibacter sp. DP1N21-5 [JAHUZF]
7475
7389
-
Leu
CAG
[ENA]
¡û
>W2110701407
JAIUZU010000007
Alphaproteobacteria
Salipiger pacificus AmN21-11 [JAIUZU]
999
913
-
Leu
CAG
[ENA]
¡û
>W2110701431
JAIUZV010000010
Alphaproteobacteria
Salipiger pacificus AmN0-18 [JAIUZV]
307570
307656
+
Leu
CAG
[ENA]
¡û
>W2110701574
JAIUZY010000005
Alphaproteobacteria
Salipiger bermudensis AmN7-7 [JAIUZY]
131762
131848
+
Leu
CAG
[ENA]
¡û
>W2110706172
JAIVMB010000024
Alphaproteobacteria
Salipiger bermudensis SY-8 [JAIVMB]
111898
111984
+
Leu
CAG
[ENA]
¡û
>C211216943
CP065915
Alphaproteobacteria
Pelagovum pacificum SM1903 [CP065915]
3915261
3915175
-
Leu
CAG
-
¡û
>C211381847
CP080623
Alphaproteobacteria
Roseovarius sp. SCSIO 43702 [CP080623]
444959
444873
-
Leu
CAG
-
¡û
>C231201033
CP084910
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
2661009
2660923
-
Leu
CAG
-
¡û
>C231566382
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
4355123
4355037
-
Leu
CAG
-
¡û
>C241010513
AP027266
Alphaproteobacteria
Roseicyclus marinus Dej080120_10 [AP027266]
3350923
3351009
+
Leu
CAG
-
¡û
>W2110802955
WVSL01000015
Alphaproteobacteria
Rhodobacterales bacterium HKCCE2091 [WVSL]
17716
17802
+
Leu
CAG
[ENA]
¡û
>W2110803105
WVSP01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0031 [WVSP]
173143
173057
-
Leu
CAG
[ENA]
¡û
>C241292621
CP130044
Alphaproteobacteria
Asticcacaulis sp. ZE23SCel15 [CP130044]
688809
688895
+
Leu
CAG
-
¡û
>W2310019446
BROH01000001
Alphaproteobacteria
Sinisalibacter aestuarii B-399 [BROH]
506229
506315
+
Leu
CAG
[ENA]
¡û
>C11100679
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
2245089
2245003
-
Leu
CAG
[Ensembl]
¡û
>W1610937342
LUOO01000021
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
141473
141559
+
Leu
CAG
[ENA]
¡û
>W1610937395
LUOP01000019
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
201505
201591
+
Leu
CAG
[ENA]
¡û
>W1710514275
FNAV01000005
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
122432
122518
+
Leu
CAG
[ENA]
¡û
>W1710516244
FNCL01000007
Alphaproteobacteria
Alloyangia pacifica [FNCL]
949
863
-
Leu
CAG
[ENA]
¡û
>W1710558237
FOLR01000004
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
24048
23962
-
Leu
CAG
[ENA]
¡û
>W1710576239
FOZW01000007
Alphaproteobacteria
Alloyangia pacifica [FOZW]
938
852
-
Leu
CAG
[ENA]
¡û
>W1710609098
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
1776248
1776162
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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