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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.676460 (95 seq.)
>W1711090979
LTBB01000007
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
494
568
+
Asn
GTT
[ENA]
¡û
>W1711090992
LTBB01000008
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
4772
4698
-
Asn
GTT
[ENA]
¡û
>C171030440
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
580668
580742
+
Asn
GTT
-
¡û
>C171030445
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
604769
604843
+
Asn
GTT
-
¡û
>C171030446
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
605300
605374
+
Asn
GTT
-
¡û
>C171030462
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
1969479
1969553
+
Asn
GTT
-
¡û
>C171131112
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
186869
186943
+
Asn
GTT
-
¡û
>C171131113
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
186973
187047
+
Asn
GTT
-
¡û
>C171131114
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
187079
187153
+
Asn
GTT
-
¡û
>W131044124
AMQH01000007
Bacillota
Clostridium tunisiense TJ [AMQH]
5266
5192
-
Asn
GTT
[ENA]
¡û
>W131252528
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
165779
165853
+
Asn
GTT
[ENA]
¡û
>W131252529
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
165883
165957
+
Asn
GTT
[ENA]
¡û
>W131252530
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
165989
166063
+
Asn
GTT
[ENA]
¡û
>WENV180180661
OAWL01000298
[OAWL] human gut metagenome; faeces
6164
6238
+
Asn
GTT
[ENA]
¢þ
>WENV180368391
OBOF01075985
[OBOF] marine metagenome; ENVO:00002010
354
428
+
Asn
GTT
[ENA]
¢þ
>WENV180421956
OBVS01000020
[OBVS] human gut metagenome; faeces
227057
227131
+
Asn
GTT
[ENA]
¢þ
>WENV180488931
OBZR01002800
[OBZR] human gut metagenome; faeces
103
29
-
Asn
GTT
[ENA]
¢þ
>WENV180760598
ODHZ01001337
[ODHZ] human metagenome; G_DNA_Stool
26409
26483
+
Asn
GTT
[ENA]
¢þ
>W141082928
AUPA01000015
Bacillota
Clostridium sp. BL8 [AUPA]
3033
3107
+
Asn
GTT
[ENA]
¡û
>W141111836
AVSV01000013
Bacillota
Clostridium sp. Ade.TY [AVSV]
80883
80809
-
Asn
GTT
[ENA]
¡û
>W141111848
AVSV01000016
Bacillota
Clostridium sp. Ade.TY [AVSV]
178037
178111
+
Asn
GTT
[ENA]
¡û
>W141111849
AVSV01000016
Bacillota
Clostridium sp. Ade.TY [AVSV]
178140
178214
+
Asn
GTT
[ENA]
¡û
>W141111850
AVSV01000016
Bacillota
Clostridium sp. Ade.TY [AVSV]
178242
178316
+
Asn
GTT
[ENA]
¡û
>WENV181805843
OGSJ01000806
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
12996
13070
+
Asn
GTT
[ENA]
¢þ
>WENV181807874
OGSQ01000495
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
13199
13273
+
Asn
GTT
[ENA]
¢þ
>WENV181807875
OGSQ01000500
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
13046
13120
+
Asn
GTT
[ENA]
¢þ
>WENV181809611
OGST01000672
[OGST] human gut metagenome; fecal sample 7 from infant 6
13351
13425
+
Asn
GTT
[ENA]
¢þ
>WENV181814832
OGTH01000410
[OGTH] human gut metagenome; fecal sample 4 from infant 6
13351
13425
+
Asn
GTT
[ENA]
¢þ
>WENV181817538
OGTN01000450
[OGTN] human gut metagenome; fecal sample 5 from infant 4
13386
13460
+
Asn
GTT
[ENA]
¢þ
>WENV181818940
OGTU01000415
[OGTU] human gut metagenome; fecal sample 6 from infant 4
8102
8176
+
Asn
GTT
[ENA]
¢þ
>W141265313
CCFF01000007
Bacillota
Clostridium culturomicium CL-6 [CCFF]
83
157
+
Asn
GTT
[ENA]
¡û
>W141265332
CCFF01000012
Bacillota
Clostridium culturomicium CL-6 [CCFF]
256541
256615
+
Asn
GTT
[ENA]
¡û
>W141265339
CCFF01000014
Bacillota
Clostridium culturomicium CL-6 [CCFF]
626934
626860
-
Asn
GTT
[ENA]
¡û
>W141265387
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
59439
59365
-
Asn
GTT
[ENA]
¡û
>W141265748
CCFK01000006
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
225
299
+
Asn
GTT
[ENA]
¡û
>W141265769
CCFK01000008
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
15014
14940
-
Asn
GTT
[ENA]
¡û
>W141265820
CCFK01000015
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
156877
156951
+
Asn
GTT
[ENA]
¡û
>W141267346
CCNN01000006
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
225
299
+
Asn
GTT
[ENA]
¡û
>W141267367
CCNN01000008
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
15014
14940
-
Asn
GTT
[ENA]
¡û
>W141267418
CCNN01000015
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
156877
156951
+
Asn
GTT
[ENA]
¡û
>WENV182850901
OKLH01000260
[OKLH] human gut metagenome; human gut
2287
2361
+
Asn
GTT
[ENA]
¢þ
>WENV182963359
OKWQ01000149
[OKWQ] human gut metagenome; stool
50260
50332
+
Asn
GTT
[ENA]
¢þ
>WENV182963413
OKWQ01000264
[OKWQ] human gut metagenome; stool
5354
5280
-
Asn
GTT
[ENA]
¢þ
>WENV183087769
OLJO01000447
[OLJO] human gut metagenome; human gut
3688
3762
+
Asn
GTT
[ENA]
¢þ
>WENV170688023
LFRM01222794
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5496
5570
+
Asn
GTT
[ENA]
¢þ
>WENV170688630
LFRM01254841
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9417
9343
-
Asn
GTT
[ENA]
¢þ
>WENV170722834
LSQX01245194
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
159
85
-
Asn
GTT
[ENA]
¢þ
>C181031792
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2436415
2436341
-
Asn
GTT
-
¡û
>C181031793
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2436309
2436235
-
Asn
GTT
-
¡û
>C181031962
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
186458
186532
+
Asn
GTT
-
¡û
>C181031963
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
186562
186636
+
Asn
GTT
-
¡û
>C181031964
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
186668
186742
+
Asn
GTT
-
¡û
>C191025602
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1951528
1951602
+
Asn
GTT
-
¡û
>C191025603
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1951634
1951708
+
Asn
GTT
-
¡û
>C191051228
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
186869
186943
+
Asn
GTT
-
¡û
>C191051229
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
186973
187047
+
Asn
GTT
-
¡û
>C191123797
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
736265
736339
+
Asn
GTT
-
¡û
>C191123798
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
736371
736445
+
Asn
GTT
-
¡û
>W09118968
ACDK01000090
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
13292
13366
+
Asn
GTT
[ENA]
¡û
>W141806466
JPMD01000009
Bacillota
Clostridium sulfidigenes [JPMD]
17797
17871
+
Asn
GTT
[ENA]
¡û
>W141806477
JPMD01000033
Bacillota
Clostridium sulfidigenes [JPMD]
71434
71360
-
Asn
GTT
[ENA]
¡û
>W141806481
JPMD01000043
Bacillota
Clostridium sulfidigenes [JPMD]
22610
22536
-
Asn
GTT
[ENA]
¡û
>W141806516
JPMD01000068
Bacillota
Clostridium sulfidigenes [JPMD]
233
307
+
Asn
GTT
[ENA]
¡û
>W141806531
JPMD01000078
Bacillota
Clostridium sulfidigenes [JPMD]
88
14
-
Asn
GTT
[ENA]
¡û
>W1911491448
OAOE01000044
Bacillota
Clostridium tertium [OAOE]
5680
5606
-
Asn
GTT
[ENA]
¡û
>W1911491656
OAOI01000002
Bacillota
Clostridium thiosulfatireducens [OAOI]
18932
19006
+
Asn
GTT
[ENA]
¡û
>W1911491696
OAOI01000030
Bacillota
Clostridium thiosulfatireducens [OAOI]
42
116
+
Asn
GTT
[ENA]
¡û
>W1911491748
OAOI01000163
Bacillota
Clostridium thiosulfatireducens [OAOI]
129599
129525
-
Asn
GTT
[ENA]
¡û
>W1911493938
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
5693
5619
-
Asn
GTT
[ENA]
¡û
>W1810367373
PVXN01000008
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
313
387
+
Asn
GTT
[ENA]
¡û
>W1810367386
PVXN01000039
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
4402
4328
-
Asn
GTT
[ENA]
¡û
>W1810579447
QEQN01000021
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
42295
42221
-
Asn
GTT
[ENA]
¡û
>W1810579463
QEQN01000040
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
4579
4505
-
Asn
GTT
[ENA]
¡û
>W1810604921
QGMU01000008
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
5789
5715
-
Asn
GTT
[ENA]
¡û
>W1810605011
QGMV01000011
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
5772
5698
-
Asn
GTT
[ENA]
¡û
>W1510060557
CCXK01000007
Bacillota
Clostridium culturomicium CL-6 [CCXK]
83
157
+
Asn
GTT
[ENA]
¡û
>W1510060576
CCXK01000012
Bacillota
Clostridium culturomicium CL-6 [CCXK]
256541
256615
+
Asn
GTT
[ENA]
¡û
>W1510060583
CCXK01000014
Bacillota
Clostridium culturomicium CL-6 [CCXK]
626934
626860
-
Asn
GTT
[ENA]
¡û
>W1510060631
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
59439
59365
-
Asn
GTT
[ENA]
¡û
>W1610030346
AYSO01000005
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
798
872
+
Asn
GTT
[ENA]
¡û
>W1610030362
AYSO01000013
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
136
210
+
Asn
GTT
[ENA]
¡û
>W1610030363
AYSO01000013
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
667
741
+
Asn
GTT
[ENA]
¡û
>W1610030382
AYSO01000018
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
134368
134442
+
Asn
GTT
[ENA]
¡û
>W1610501257
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255114
255188
+
Asn
GTT
[ENA]
¡û
>W1610507731
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
103468
103542
+
Asn
GTT
[ENA]
¡û
>W1610507732
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
103574
103648
+
Asn
GTT
[ENA]
¡û
>W1610925178
LTBB01000007
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
494
568
+
Asn
GTT
[ENA]
¡û
>W1610925191
LTBB01000008
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
4772
4698
-
Asn
GTT
[ENA]
¡û
>W1710027469
AYSO01000005
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
798
872
+
Asn
GTT
[ENA]
¡û
>W1710027485
AYSO01000013
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
136
210
+
Asn
GTT
[ENA]
¡û
>W1710027486
AYSO01000013
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
667
741
+
Asn
GTT
[ENA]
¡û
>W1710027505
AYSO01000018
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
134368
134442
+
Asn
GTT
[ENA]
¡û
>W1710494727
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255114
255188
+
Asn
GTT
[ENA]
¡û
>W1710499949
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
103468
103542
+
Asn
GTT
[ENA]
¡û
>W1710499950
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
103574
103648
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK