This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.676500 (49 seq.)
>W1710876941
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
577
504
-
Gln
TTG
[ENA]
¡û
>W1710876949
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
407
335
-
Gln
TTG
[ENA]
¡û
>W1710877091
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70291
70364
+
Gln
TTG
[ENA]
¡û
>W1710877107
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76743
76815
+
Gln
TTG
[ENA]
¡û
>W1710909383
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1360
1432
+
Gln
TTG
[ENA]
¡û
>W1710909403
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258189
258262
+
Gln
TTG
[ENA]
¡û
>W1711116994
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774211
774139
-
Gln
TTG
[ENA]
¡û
>W1711117014
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
679
606
-
Gln
TTG
[ENA]
¡û
>W131241545
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
261264
261337
+
Gln
TTG
[ENA]
¡û
>W131241566
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928202
928130
-
Gln
TTG
[ENA]
¡û
>W1711632641
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
970
1042
+
Gln
TTG
[ENA]
¡û
>W1711632658
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
221818
221891
+
Gln
TTG
[ENA]
¡û
>W1712017229
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
850
922
+
Gln
TTG
[ENA]
¡û
>W1712017303
NESR01000017
Bacillota
Kurthia gibsonii [NESR]
478
405
-
Gln
TTG
[ENA]
¡û
>C171040557
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162840
1162912
+
Gln
TTG
-
¡û
>C171040575
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
178974
178901
-
Gln
TTG
-
¡û
>C171072138
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724192
724264
+
Gln
TTG
-
¡û
>C171072153
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3002782
3002709
-
Gln
TTG
-
¡û
>WENV170022535
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
650
722
+
Gln
TTG
[ENA]
¢þ
>W141484757
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687363
1687291
-
Gln
TTG
[ENA]
¡û
>W141484797
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
242134
242207
+
Gln
TTG
[ENA]
¡û
>W141730918
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283249
283321
+
Gln
TTG
[ENA]
¡û
>W141730964
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2478066
2477993
-
Gln
TTG
[ENA]
¡û
>W141731020
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287598
2287670
+
Gln
TTG
[ENA]
¡û
>C141009941
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
678064
678136
+
Gln
TTG
[Ensembl]
¡û
>C141009962
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2885164
2885091
-
Gln
TTG
[Ensembl]
¡û
>W1511403827
JTLL01000041
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
425
353
-
Gln
TTG
[ENA]
¡û
>W1511686079
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40760
40688
-
Gln
TTG
[ENA]
¡û
>W1511686101
LFQN01000039
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
8110
8183
+
Gln
TTG
[ENA]
¡û
>W1511699957
LGIW01000003
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
251
324
+
Gln
TTG
[ENA]
¡û
>W1511699990
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
802
874
+
Gln
TTG
[ENA]
¡û
>W1610589615
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
674
601
-
Gln
TTG
[ENA]
¡û
>W1610589631
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1057
1129
+
Gln
TTG
[ENA]
¡û
>W1610589662
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
844
916
+
Gln
TTG
[ENA]
¡û
>W1610589692
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18077
18150
+
Gln
TTG
[ENA]
¡û
>W1610739287
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
577
504
-
Gln
TTG
[ENA]
¡û
>W1610739295
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
407
335
-
Gln
TTG
[ENA]
¡û
>W1610739437
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70291
70364
+
Gln
TTG
[ENA]
¡û
>W1610739453
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76743
76815
+
Gln
TTG
[ENA]
¡û
>W1610767742
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1360
1432
+
Gln
TTG
[ENA]
¡û
>W1610767762
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258189
258262
+
Gln
TTG
[ENA]
¡û
>W1610928353
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774211
774139
-
Gln
TTG
[ENA]
¡û
>W1610928373
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
679
606
-
Gln
TTG
[ENA]
¡û
>W1710511218
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1360
1432
+
Gln
TTG
[ENA]
¡û
>W1710511238
FMYN01000004
Bacillota
Exiguobacterium enclense [FMYN]
258189
258262
+
Gln
TTG
[ENA]
¡û
>W1710708895
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
674
601
-
Gln
TTG
[ENA]
¡û
>W1710708911
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1057
1129
+
Gln
TTG
[ENA]
¡û
>W1710708942
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
844
916
+
Gln
TTG
[ENA]
¡û
>W1710708972
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18077
18150
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK