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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67693 (34 seq.)
>W1711078819
LSNE01000009
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
242015
241929
-
Leu
CAG
[ENA]
¡û
>W131175774
ARJM01000068
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
245520
245434
-
Leu
CAG
[ENA]
¡û
>W131175775
ARJM01000068
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
245339
245253
-
Leu
CAG
[ENA]
¡û
>W131179617
ARMN01000026
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
537868
537782
-
Leu
CAG
[ENA]
¡û
>W131179618
ARMN01000026
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
537700
537614
-
Leu
CAG
[ENA]
¡û
>WENV182556746
OJDH01000033
[OJDH] seawater metagenome; Sea water
74995
75081
+
Leu
CAG
[ENA]
¡û
>WENV170014576
AYRH01016039
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
199
113
-
Leu
CAG
[ENA]
¡û
>WENV170704631
LLEL01015043
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
274
360
+
Leu
CAG
[ENA]
¡û
>WENV170704653
LLEL01021966
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
78
164
+
Leu
CAG
[ENA]
¡û
>W141557685
JHVJ01000001
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
85951
86037
+
Leu
CAG
[ENA]
¡û
>W141557686
JHVJ01000001
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
86136
86222
+
Leu
CAG
[ENA]
¡û
>W2011482894
RQXV01000006
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
126537
126623
+
Leu
CAG
[ENA]
¡û
>W2011482895
RQXV01000006
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
126704
126790
+
Leu
CAG
[ENA]
¡û
>W2011482973
RQXW01000010
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
121011
121097
+
Leu
CAG
[ENA]
¡û
>W2011482974
RQXW01000010
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
121177
121263
+
Leu
CAG
[ENA]
¡û
>W2110033943
BMOH01000002
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
127237
127323
+
Leu
CAG
[ENA]
¡û
>W2110033944
BMOH01000002
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
127404
127490
+
Leu
CAG
[ENA]
¡û
>W2110313415
JADEYS010000021
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
796
882
+
Leu
CAG
[ENA]
¡û
>W2110313416
JADEYS010000021
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
980
1066
+
Leu
CAG
[ENA]
¡û
>W2110612298
JAHKQE010000027
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
36647
36733
+
Leu
CAG
[ENA]
¡û
>W2110612299
JAHKQE010000027
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
36814
36900
+
Leu
CAG
[ENA]
¡û
>C211000070
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
59461
59547
+
Leu
CAG
-
¡û
>C211000071
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
59629
59715
+
Leu
CAG
-
¡û
>C231019744
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
59463
59549
+
Leu
CAG
-
¡û
>C231019745
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
59631
59717
+
Leu
CAG
-
¡û
>C231131075
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3540055
3539969
-
Leu
CAG
-
¡û
>C231131076
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3539862
3539776
-
Leu
CAG
-
¡û
>C161091130
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
58756
58842
+
Leu
CAG
[Ensembl]
¡û
>C161091131
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
58937
59023
+
Leu
CAG
[Ensembl]
¡û
>W1610062695
BCNS01000091
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
106029
105943
-
Leu
CAG
[ENA]
¡û
>W1610062696
BCNS01000091
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
105848
105762
-
Leu
CAG
[ENA]
¡û
>W1610917729
LSNE01000009
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
242015
241929
-
Leu
CAG
[ENA]
¡û
>W1710060171
BCNS01000091
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
106029
105943
-
Leu
CAG
[ENA]
¡û
>W1710060172
BCNS01000091
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
105848
105762
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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