This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67701 (46 seq.)
>C171000426
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
768849
768935
+
Tyr
GTA
-
¡û
>C171000738
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
760415
760501
+
Tyr
GTA
-
¡û
>C171001373
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
678952
679038
+
Tyr
GTA
-
¡û
>C171002403
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
1847583
1847669
+
Tyr
GTA
-
¡û
>C025688
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
679120
679206
+
Tyr
GTA
[Ensembl]
¡û
>w024842
AAZB01000006
Thermotogota
Petrotoga mobilis SJ95 [AAZB]
72006
72094
+
Tyr
GTA
[ENA]
¡û
>WENV180097995
MTBK01222028
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
93
7
-
Tyr
GTA
[ENA]
¢þ
>WENV180099113
MTBK01289133
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
961
1047
+
Tyr
GTA
[ENA]
¢þ
>W141020333
AJIP01000047
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
59452
59366
-
Tyr
GTA
[ENA]
¡û
>C08007597
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
388766
388683
-
Tyr
GTA
[Ensembl]
¡û
>WENV170676101
LDZR01000908
[LDZR] terrestrial metagenome; oil reservoir sample K2
4105
4191
+
Tyr
GTA
[ENA]
¢þ
>WENV170677198
LDZT01003639
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3467
3381
-
Tyr
GTA
[ENA]
¢þ
>WENV170688259
LFRM01236350
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8112
8198
+
Tyr
GTA
[ENA]
¢þ
>WENV170725086
LSQX01329882
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
63930
63844
-
Tyr
GTA
[ENA]
¢þ
>WENV170779035
LZCG01000120
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
3028
2942
-
Tyr
GTA
[ENA]
¢þ
>W1910002776
ATNS01000007
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
2142
2056
-
Tyr
GTA
[ENA]
¡û
>W1910002906
AUPM01000010
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
57993
57907
-
Tyr
GTA
[ENA]
¡û
>W1910006056
AZRI01000049
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
12741
12655
-
Tyr
GTA
[ENA]
¡û
>W1910006091
AZRJ01000033
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
12741
12655
-
Tyr
GTA
[ENA]
¡û
>W1910006120
AZRK01000006
Thermotogota
Petrotoga sp. 9PWA.NaAc.5.4 [AZRK]
22096
22182
+
Tyr
GTA
[ENA]
¡û
>W1910006152
AZRL01000003
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
102565
102479
-
Tyr
GTA
[ENA]
¡û
>W1910006244
AZRN01000004
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
46621
46535
-
Tyr
GTA
[ENA]
¡û
>W1910129011
BHXD01000011
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
18828
18914
+
Tyr
GTA
[ENA]
¡û
>W1910563522
JAHC01000008
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
60881
60795
-
Tyr
GTA
[ENA]
¡û
>W1910563565
JAIP01000004
Thermotogota
Petrotoga sp. SL27 [JAIP]
131052
130966
-
Tyr
GTA
[ENA]
¡û
>W1910568791
JGVM01000006
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
55862
55776
-
Tyr
GTA
[ENA]
¡û
>W1910990295
NKRG01000006
Thermotogota
Thermosipho africanus Ob7 [NKRG]
120344
120258
-
Tyr
GTA
[ENA]
¡û
>W1810596024
QGGI01000012
Thermotogota
Oceanotoga teriensis DSM 24906 [QGGI]
31428
31514
+
Tyr
GTA
[ENA]
¡û
>C151104188
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
380199
380285
+
Tyr
GTA
[Ensembl]
¡û
>C121009782
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
1781462
1781548
+
Tyr
GTA
[Ensembl]
¡û
>W1610032650
AZAX01000027
Thermotogota
Marinitoga sp. 1155 [AZAX]
72810
72896
+
Tyr
GTA
[ENA]
¡û
>W1610606971
LFTL01000090
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
8112
8198
+
Tyr
GTA
[ENA]
¡û
>W1610612769
LGFC01000084
Thermotogota
Petrotoga mobilis [LGFC]
4105
4191
+
Tyr
GTA
[ENA]
¡û
>W1610614068
LGGR01000095
Thermotogota
Petrotoga mobilis [LGGR]
3467
3381
-
Tyr
GTA
[ENA]
¡û
>W1710029395
AZAX01000027
Thermotogota
Marinitoga sp. 1155 [AZAX]
72810
72896
+
Tyr
GTA
[ENA]
¡û
>W1710582860
FQUI01000001
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
101505
101591
+
Tyr
GTA
[ENA]
¡û
>W1710586898
FQXN01000007
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
18146
18060
-
Tyr
GTA
[ENA]
¡û
>W1710660951
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
36852
36938
+
Tyr
GTA
[ENA]
¡û
>W1710660997
JYCY01000010
Thermotogota
Thermosipho melanesiensis [JYCY]
31979
32065
+
Tyr
GTA
[ENA]
¡û
>W1710661087
JYDA01000010
Thermotogota
Thermosipho melanesiensis [JYDA]
32074
32160
+
Tyr
GTA
[ENA]
¡û
>W1710661131
JYDB01000010
Thermotogota
Thermosipho melanesiensis [JYDB]
31979
32065
+
Tyr
GTA
[ENA]
¡û
>W1710701241
LBEX01000013
Thermotogota
Thermosipho sp. 1074 [LBEX]
34574
34660
+
Tyr
GTA
[ENA]
¡û
>W1710701331
LBFC01000015
Thermotogota
Thermosipho affectus [LBFC]
34530
34616
+
Tyr
GTA
[ENA]
¡û
>W1710728258
LFTL01000090
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
8112
8198
+
Tyr
GTA
[ENA]
¡û
>W1710734090
LGFC01000084
Thermotogota
Petrotoga mobilis [LGFC]
4105
4191
+
Tyr
GTA
[ENA]
¡û
>W1710735151
LGGR01000095
Thermotogota
Petrotoga mobilis [LGGR]
3467
3381
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK