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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67817 (16 seq.)
>W131164522
ARAV01000010
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
5903
5817
-
Leu
CAG
[ENA]
¡û
>W1711186766
LWOM01000029
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
109452
109538
+
Leu
CAG
[ENA]
¡û
>W1711510262
MLAL01000023
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
53981
53895
-
Leu
CAG
[ENA]
¡û
>C171066319
CP017711
Actinomycetota
Corynebacterium pseudotuberculosis MEX1 [CP017711]
39351
39437
+
Leu
CAG
-
¡û
>WENV170561625
CZCA01016928
[CZCA] anaerobic digester metagenome; anaerobic digester
123
37
-
Leu
CAG
[ENA]
¢þ
>C181039009
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
41308
41392
+
Leu
CAG
-
¡û
>C181064174
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
2919027
2919113
+
Leu
CAG
-
¡û
>C181069948
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
64280
64366
+
Leu
CAG
-
¡û
>C181118411
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
51437
51523
+
Leu
CAG
-
¡û
>C181211244
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
459429
459513
+
Leu
CAG
-
¡û
>C181215101
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
905019
905103
+
Leu
CAG
-
¡û
>W1910374215
FUIB01000046
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
201440
201526
+
Leu
CAG
[ENA]
¡û
>W1810058153
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
683729
683645
-
Leu
CAG
[ENA]
¡û
>C151007247
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
36954
37040
+
Leu
CAG
[Ensembl]
¡û
>W1511644857
LDYE01000001
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
43081
43167
+
Leu
CAG
[ENA]
¡û
>W1710596013
FTMH01000028
Actinomycetota
Corynebacterium afermentans [FTMH]
12404
12490
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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