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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68142 (31 seq.)
>W131158409
AQUA01000007
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
60981
61065
+
Leu
GAG
[ENA]
¡û
>W131183109
ARRO01000007
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
54823
54737
-
Leu
GAG
[ENA]
¡û
>WENV180110484
OAPN01000033
[OAPN] marine metagenome; 2011
2590
2506
-
Leu
GAG
[ENA]
¢þ
>WENV181166101
OEIS01451275
[OEIS] soil metagenome; soil
131
45
-
Leu
GAG
[ENA]
¢þ
>WENV181369100
OFQN01024655
[OFQN] freshwater metagenome; Freshwater Lake
439
355
-
Leu
GAG
[ENA]
¢þ
>WENV181401688
OFTX01002714
[OFTX] sludge metagenome; sludge
1475
1560
+
Leu
GAG
[ENA]
¢þ
>WENV181835776
OGVI01019052
[OGVI] freshwater metagenome; freshwater
599
515
-
Leu
GAG
[ENA]
¢þ
>WENV181836021
OGVJ01000081
[OGVJ] freshwater metagenome; freshwater
2439
2523
+
Leu
GAG
[ENA]
¢þ
>WENV181836378
OGVJ01005652
[OGVJ] freshwater metagenome; freshwater
1128
1212
+
Leu
GAG
[ENA]
¢þ
>WENV181843677
OGVU01044258
[OGVU] freshwater metagenome; freshwater
492
408
-
Leu
GAG
[ENA]
¢þ
>WENV181853286
OGWI01001599
[OGWI] freshwater metagenome; freshwater
1234
1150
-
Leu
GAG
[ENA]
¢þ
>WENV181855599
OGWM01000002
[OGWM] freshwater metagenome; freshwater
13495
13579
+
Leu
GAG
[ENA]
¢þ
>WENV183670631
ORJL010965430
[ORJL] groundwater metagenome; groundwater
2256
2172
-
Leu
GAG
[ENA]
¢þ
>WENV183676671
ORJL011653344
[ORJL] groundwater metagenome; groundwater
101
17
-
Leu
GAG
[ENA]
¢þ
>WENV170604042
FUWD010355997
[FUWD] metagenome; unknown
514
430
-
Leu
GAG
[ENA]
¢þ
>WENV170645482
JNSK01000004
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
43612
43698
+
Leu
GAG
[ENA]
¢þ
>WENV170645522
JNSK01000046
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14247
14161
-
Leu
GAG
[ENA]
¢þ
>C181018665
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
875247
875163
-
Leu
GAG
-
¡û
>C181018772
CP015606
Actinomycetota
Actinobacteria bacterium IMCC26077 [CP015606]
1039815
1039731
-
Leu
GAG
-
¡û
>C181020881
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
682122
682206
+
Leu
GAG
-
¡û
>C181020955
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
688013
688097
+
Leu
GAG
-
¡û
>C181020991
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
678001
678085
+
Leu
GAG
-
¡û
>C181021027
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
651657
651741
+
Leu
GAG
-
¡û
>C181021139
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
667942
668026
+
Leu
GAG
-
¡û
>C181021175
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
648240
648324
+
Leu
GAG
-
¡û
>C181021289
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
626839
626923
+
Leu
GAG
-
¡û
>C181021339
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
639629
639545
-
Leu
GAG
-
¡û
>W1510015668
BBRE01000004
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
49093
49179
+
Leu
GAG
[ENA]
¡û
>W1510015715
BBRF01000003
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
231018
230932
-
Leu
GAG
[ENA]
¡û
>WENV047258
AACY022650832
Marine microbial communities from Global Ocean Sampling (GOS)
111
197
+
Leu
GAG
[ENA]
>WENV074953
AACY024006035
Marine microbial communities from Global Ocean Sampling (GOS)
417
503
+
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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