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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68425 (13 seq.)
>C019133
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
4023277
4023191
-
Leu
CAA
[Ensembl]
¡û
>WENV180354152
OBLQ011426168
[OBLQ] soil metagenome; soil
178
92
-
Leu
CAA
[ENA]
¡û
>w001361
AAAG02000004
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
131132
131220
+
Leu
CAA
[ENA]
¡û
>WENV170701127
LKGT01003180
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
2503
2417
-
Leu
CAA
[ENA]
¡û
>WENV170964296
MRWG01007225
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1368
1454
+
Leu
CAA
[ENA]
¡û
>W2010105462
BJZO01000013
Alphaproteobacteria
Pararhodospirillum oryzae NBRC 107573 [BJZO]
33091
33177
+
Leu
CAA
[ENA]
¡û
>C211196887
CP064970
Alphaproteobacteria
Alphaproteobacteria bacterium [CP064970]
1565651
1565737
+
Leu
CAA
-
¡û
>C211361148
CP077803
Alphaproteobacteria
Rhodospirillum rubrum DSM 467 [CP077803]
4023293
4023207
-
Leu
CAA
-
¡û
>W2110752255
NHSM01000237
Alphaproteobacteria
Rhodospirillum rubrum FR1-mutantIV [NHSM]
26017
25931
-
Leu
CAA
[ENA]
¡û
>W2110754029
NRSB01000002
Alphaproteobacteria
Rhodospirillum rubrum DSM 1068 [NRSB]
54023
54109
+
Leu
CAA
[ENA]
¡û
>W2110754084
NRSC01000013
Alphaproteobacteria
Rhodospirillum rubrum DSM 107 [NRSC]
8146
8060
-
Leu
CAA
[ENA]
¡û
>C11118847
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
4023277
4023191
-
Leu
CAA
[Ensembl]
¡û
>W1611008014
LXTL01000043
Alphaproteobacteria
Alphaproteobacteria bacterium SPGG1 [LXTL]
2503
2417
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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