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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68538 (88 seq.)
>W1711120866
LUHG01000110
Bacteroidota
Hydrotalea flava [LUHG]
87352
87268
-
Leu
CAG
[ENA]
¡û
>W1711168551
LVYD01000068
Bacteroidota
Niastella vici [LVYD]
70208
70292
+
Leu
CAG
[ENA]
¡û
>W131218990
ATYE01000004
Bacteroidota
Asinibacterium sp. OR43 OR43 [ATYE]
170076
169990
-
Leu
CAG
[ENA]
¡û
>W1711504402
MKUN01000029
Bacteroidota
Bacteroidetes bacterium 46-16 [MKUN]
48042
47956
-
Leu
CAG
[ENA]
¡û
>WENV180029397
FTJK01000391
[FTJK] metagenome; soil
115
30
-
Leu
CAG
[ENA]
¡û
>WENV180099627
NMRC01021889
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
219
135
-
Leu
CAG
[ENA]
¡û
>WENV181168082
OEIU01153892
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
398
482
+
Leu
CAG
[ENA]
¡û
>WENV181169801
OEIV010010508
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
404
318
-
Leu
CAG
[ENA]
¡û
>WENV181308102
OFIS01000214
[OFIS] sludge metagenome; sludge
25518
25604
+
Leu
CAG
[ENA]
¡û
>WENV181308490
OFIS01035542
[OFIS] sludge metagenome; sludge
339
425
+
Leu
CAG
[ENA]
¡û
>WENV181311833
OFJB01015138
[OFJB] sludge metagenome; sludge
692
608
-
Leu
CAG
[ENA]
¡û
>WENV181311971
OFJB01028566
[OFJB] sludge metagenome; sludge
722
638
-
Leu
CAG
[ENA]
¡û
>WENV181401634
OFTX01001900
[OFTX] sludge metagenome; sludge
1148
1064
-
Leu
CAG
[ENA]
¡û
>WENV181401977
OFTY01000006
[OFTY] sludge metagenome; sludge
202242
202156
-
Leu
CAG
[ENA]
¡û
>WENV181402153
OFTY01000159
[OFTY] sludge metagenome; sludge
15379
15465
+
Leu
CAG
[ENA]
¡û
>WENV181402759
OFTY01039485
[OFTY] sludge metagenome; sludge
409
324
-
Leu
CAG
[ENA]
¡û
>W141220173
AZXP01000001
Bacteroidota
Asinibacterium sp. OR53 OR53 [AZXP]
2054884
2054970
+
Leu
CAG
[ENA]
¡û
>WENV183689544
ORMF011455425
[ORMF] groundwater metagenome; groundwater
38
124
+
Leu
CAG
[ENA]
¡û
>WENV183703916
PDVJ01068339
[PDVJ] alkali sediment metagenome; glacial lake sediment
103
19
-
Leu
CAG
[ENA]
¡û
>WENV183731841
PJTT01000243
[PJTT] soil metagenome; Soil (2) enriched on wood chips
62126
62042
-
Leu
CAG
[ENA]
¡û
>WENV170009320
APMI01000072
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1211443
1211359
-
Leu
CAG
[ENA]
¡û
>WENV170009580
APMI01000762
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
11019
11105
+
Leu
CAG
[ENA]
¡û
>WENV170680873
LFEF01028623
[LFEF] freshwater metagenome; waterbloom
1722758
1722672
-
Leu
CAG
[ENA]
¡û
>WENV170981396
MWVT01082186
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
331
415
+
Leu
CAG
[ENA]
¡û
>WENV170982124
MWVU01016773
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
664
578
-
Leu
CAG
[ENA]
¡û
>WENV170983195
MWVV01011646
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1831
1917
+
Leu
CAG
[ENA]
¡û
>WENV170983811
MWVV01096657
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
114
28
-
Leu
CAG
[ENA]
¡û
>WENV170984889
MWVW01001863
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
2534
2618
+
Leu
CAG
[ENA]
¡û
>WENV170985105
MWVW01022943
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
179
263
+
Leu
CAG
[ENA]
¡û
>WENV170985315
MWVW01064735
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
34
118
+
Leu
CAG
[ENA]
¡û
>WENV170985843
MWVX01004283
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
4369
4285
-
Leu
CAG
[ENA]
¡û
>WENV170986266
MWVX01026801
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
587
503
-
Leu
CAG
[ENA]
¡û
>WENV170986695
MWVX01067357
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
197
281
+
Leu
CAG
[ENA]
¡û
>WENV170987009
MWVX01109432
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
639
723
+
Leu
CAG
[ENA]
¡û
>WENV170988995
MWVY01051105
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
278
194
-
Leu
CAG
[ENA]
¡û
>WENV170992058
MWWB01000331
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
9893
9977
+
Leu
CAG
[ENA]
¡û
>WENV170992288
MWWB01012819
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
13
97
+
Leu
CAG
[ENA]
¡û
>WENV170992679
MWWB01065295
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
791
704
-
Leu
CAG
[ENA]
¡û
>WENV170993488
MWWB01323210
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
369
283
-
Leu
CAG
[ENA]
¡û
>WENV170996971
MWWG01011948
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
203
119
-
Leu
CAG
[ENA]
¡û
>WENV170997149
MWWG01039007
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
136
223
+
Leu
CAG
[ENA]
¡û
>WENV170997440
MWWG01133099
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
95
8
-
Leu
CAG
[ENA]
¡û
>WENV170998862
MWWJ01134189
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
225
141
-
Leu
CAG
[ENA]
¡û
>W1911741146
QUZZ01000003
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
313205
313291
+
Leu
CAG
[ENA]
¡û
>W1911744268
QVNU01000001
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
7191
7105
-
Leu
CAG
[ENA]
¡û
>W1911787357
QXZY01000010
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
305557
305472
-
Leu
CAG
[ENA]
¡û
>W1810239569
PPSL01000003
Bacteroidota
Flavipsychrobacter stenotrophus RB1R16 [PPSL]
589343
589427
+
Leu
CAG
[ENA]
¡û
>W1810351388
PVEQ01000001
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
74651
74735
+
Leu
CAG
[ENA]
¡û
>W1810400504
PYGD01000009
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
2471
2386
-
Leu
CAG
[ENA]
¡û
>W1810400505
PYGD01000009
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
314
229
-
Leu
CAG
[ENA]
¡û
>W1810577642
QEOK01000001
Bacteroidota
Filimonas sp. YR581 [QEOK]
698067
697980
-
Leu
CAG
[ENA]
¡û
>W1810686114
QKZV01000006
Bacteroidota
Hydrotalea sandarakina DSM 23241 [QKZV]
121555
121471
-
Leu
CAG
[ENA]
¡û
>W2010104577
BJYT01000016
Bacteroidota
Segetibacter aerophilus NBRC 106135 [BJYT]
63147
63063
-
Leu
CAG
[ENA]
¡û
>W2010447494
JAACJS010000015
Bacteroidota
Sediminibacterium roseum SYL130 [JAACJS]
203811
203725
-
Leu
CAG
[ENA]
¡û
>W2011306528
QUZZ01000003
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
313205
313291
+
Leu
CAG
[ENA]
¡û
>W2011308996
QVNU01000001
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
7191
7105
-
Leu
CAG
[ENA]
¡û
>W2011455681
RMBX01000009
Bacteroidota
Chitinophaga barathri YLT18 [RMBX]
39399
39484
+
Leu
CAG
[ENA]
¡û
>W2011544578
SDHW01000001
Bacteroidota
Lacibacter sp. TTM-7 [SDHW]
232813
232897
+
Leu
CAG
[ENA]
¡û
>W2011624547
SLYK01000008
Bacteroidota
Niastella sp. CF465 [SLYK]
367187
367273
+
Leu
CAG
[ENA]
¡û
>W2011639943
SMSK01000001
Bacteroidota
Segetibacter sp. 3557_3 [SMSK]
300332
300416
+
Leu
CAG
[ENA]
¡û
>W2011752457
SZQL01000017
Bacteroidota
Panacibacter sp. 17mud1-8 [SZQL]
110400
110484
+
Leu
CAG
[ENA]
¡û
>W2012082440
VLLE01000002
Bacteroidota
Lacibacter cauensis CGMCC 1.7271 [VLLE]
733648
733732
+
Leu
CAG
[ENA]
¡û
>W2012082549
VLLG01000003
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
1324803
1324719
-
Leu
CAG
[ENA]
¡û
>W2012156570
VUOC01000002
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
1543148
1543233
+
Leu
CAG
[ENA]
¡û
>W2012157172
VVIP01000084
Bacteroidota
Chitinophagaceae bacterium YG09 [VVIP]
110588
110674
+
Leu
CAG
[ENA]
¡û
>ENV09003107
ADGO01005203
Compost metagenome contig00001
1133
1219
+
Leu
CAG
[ENA]
¡û
>ENV09003770
ADGO01170017
Compost metagenome contig00001
381
297
-
Leu
CAG
[ENA]
¡û
>W2110395452
JADWYR010000003
Bacteroidota
Panacibacter sp. DH6 [JADWYR]
268671
268757
+
Leu
CAG
[ENA]
¡û
>W2110447222
JAESDL010000020
Bacteroidota
Hydrotalea lipotrueae TMF_100 [JAESDL]
47046
46962
-
Leu
CAG
[ENA]
¡û
>W2110492973
JAFEWC010000001
Bacteroidota
Segetibacter sp. SYSU D00508 [JAFEWC]
1511563
1511479
-
Leu
CAG
[ENA]
¡û
>W2110575344
JAGTXB010000022
Bacteroidota
Chitinophaga sp. 2R12 [JAGTXB]
64698
64614
-
Leu
CAG
[ENA]
¡û
>C211401649
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
1524547
1524633
+
Leu
CAG
-
¡û
>C231156257
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
4254522
4254607
+
Leu
CAG
-
¡û
>C231156258
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
4370246
4370330
+
Leu
CAG
-
¡û
>C241066014
CP042434
Bacteroidota
Arachidicoccus ginsenosidivorans Gsoil 809 [CP042434]
1334357
1334441
+
Leu
CAG
-
¡û
>C161092530
CP015971
Bacteroidota
Arachidicoccus sp. BS20 [CP015971]
2739028
2739114
+
Leu
CAG
[Ensembl]
¡û
>W1610503589
FLNR01000012
Bacteroidota
Hydrotalea flava [FLNR]
6612
6526
-
Leu
CAG
[ENA]
¡û
>W1610503606
FLNS01000008
Bacteroidota
Hydrotalea flava [FLNS]
4545
4631
+
Leu
CAG
[ENA]
¡û
>W1610932063
LUHG01000110
Bacteroidota
Hydrotalea flava [LUHG]
87352
87268
-
Leu
CAG
[ENA]
¡û
>WENV077291
AAFX01017362
Soil microbial communities from Minnesota Farm
529
617
+
Leu
CAG
[ENA]
>W1710528854
FNNO01000001
Bacteroidota
Hydrobacter penzbergensis [FNNO]
540649
540563
-
Leu
CAG
[ENA]
¡û
>W1710533203
FNQY01000026
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
54448
54532
+
Leu
CAG
[ENA]
¡û
>W1710544812
FOBB01000003
Bacteroidota
Chitinophaga rupis [FOBB]
115521
115607
+
Leu
CAG
[ENA]
¡û
>W1710544813
FOBB01000003
Bacteroidota
Chitinophaga rupis [FOBB]
123480
123568
+
Leu
CAG
[ENA]
¡û
>W1710555290
FOJG01000001
Bacteroidota
Chitinophaga arvensicola [FOJG]
3046066
3045980
-
Leu
CAG
[ENA]
¡û
>W1710559124
FOMK01000002
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
1011210
1011294
+
Leu
CAG
[ENA]
¡û
>W1710559138
FOMK01000006
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
22112
22028
-
Leu
CAG
[ENA]
¡û
>W1710604496
FUZZ01000001
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
1702466
1702552
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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