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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68639 (37 seq.)
>W1710878032
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
741179
741265
+
Leu
CAA
[ENA]
¡û
>W1711075308
LSKH01000193
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
7369
7283
-
Leu
CAA
[ENA]
¡û
>W1711386412
MEFH01000059
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
30525
30611
+
Leu
CAA
[ENA]
¡û
>W1711502522
MKSU01000001
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
178237
178323
+
Leu
CAA
[ENA]
¡û
>W1711942663
NBBI01000001
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
712266
712352
+
Leu
CAA
[ENA]
¡û
>W1711942713
NBBJ01000001
Alphaproteobacteria
Sphingomonas mucosissima [NBBJ]
1352356
1352270
-
Leu
CAA
[ENA]
¡û
>C171095041
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
85030
85116
+
Leu
CAA
-
¡û
>C171117079
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
883747
883661
-
Leu
CAA
-
¡û
>W131196584
ASTM01000031
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
40690
40776
+
Leu
CAA
[ENA]
¡û
>C024965
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4383311
4383397
+
Leu
CAA
[Ensembl]
¡û
>WENV180020411
FTCZ01003154
[FTCZ] metagenome; soil
1468
1554
+
Leu
CAA
[ENA]
¡û
>WENV180020675
FTCZ01008208
[FTCZ] metagenome; soil
29600
29514
-
Leu
CAA
[ENA]
¡û
>WENV171003231
NNBT01002666
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
78759
78845
+
Leu
CAA
[ENA]
¡û
>C181081595
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
1289435
1289521
+
Leu
CAA
-
¡û
>C181108611
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
60453
60539
+
Leu
CAA
-
¡û
>C181133060
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1410647
1410733
+
Leu
CAA
-
¡û
>W09106502
AAVK01000002
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
251855
251941
+
Leu
CAA
[ENA]
¡û
>W141713948
JMUB01000036
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
17540
17454
-
Leu
CAA
[ENA]
¡û
>W1911411165
NWUF01000032
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
12474
12560
+
Leu
CAA
[ENA]
¡û
>W1911719070
QQWW01000004
Alphaproteobacteria
Sphingomonas sp. ABOLG S-NIH.Pt13_0512 [QQWW]
233557
233471
-
Leu
CAA
[ENA]
¡û
>W2011137867
NWUF01000032
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
12474
12560
+
Leu
CAA
[ENA]
¡û
>W2011685888
SRXT01000007
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
345318
345404
+
Leu
CAA
[ENA]
¡û
>W2011692519
SSTI01000004
Alphaproteobacteria
Sphingomonas olei NM83_B4-11 [SSTI]
276827
276741
-
Leu
CAA
[ENA]
¡û
>C211121952
CP059319
Alphaproteobacteria
Sphingomonas wittichii MPO218 [CP059319]
2504424
2504338
-
Leu
CAA
-
¡û
>C211181046
CP063839
Alphaproteobacteria
Sphingopyxis granuli RW412 [CP063839]
2974411
2974325
-
Leu
CAA
-
¡û
>C231166265
CP080430
Alphaproteobacteria
Sphingomonas sp. DS-9 [CP080430]
1824080
1823994
-
Leu
CAA
-
¡û
>C231332108
CP093335
Alphaproteobacteria
Sphingopyxis granuli A2-E30 [CP093335]
2948518
2948432
-
Leu
CAA
-
¡û
>C231486647
CP104207
Alphaproteobacteria
Sphingopyxis sp. PET50 [CP104207]
1684090
1684004
-
Leu
CAA
-
¡û
>W2110784437
WMBU01000031
Alphaproteobacteria
Rhizorhabdus histidinilytica BT1 5.2 [WMBU]
25030
25116
+
Leu
CAA
[ENA]
¡û
>W1511633041
LDES01000024
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
316369
316455
+
Leu
CAA
[ENA]
¡û
>C161040517
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
2666088
2666002
-
Leu
CAA
[Ensembl]
¡û
>W121034449
AHKO01000616
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
1430
1516
+
Leu
CAA
[ENA]
¡û
>W1610071380
BCUA01000048
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
29804
29890
+
Leu
CAA
[ENA]
¡û
>W1610740378
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
741179
741265
+
Leu
CAA
[ENA]
¡û
>W1710068745
BCUA01000048
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
29804
29890
+
Leu
CAA
[ENA]
¡û
>W1710602733
FUYM01000002
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
488346
488432
+
Leu
CAA
[ENA]
¡û
>W1710743478
LGVA01000031
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
21998
22084
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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