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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68890 (28 seq.)
>WENV180013965
FPIC01016201
[FPIC] soil metagenome; Soil
87
1
-
Tyr
GTA
[ENA]
¡û
>WENV180037508
FVAA011152213
[FVAA] soil metagenome; Soil
216
130
-
Tyr
GTA
[ENA]
¡û
>WENV180634574
OCRB01034618
[OCRB] metagenome; diffuse fluid
210
125
-
Tyr
GTA
[ENA]
¡û
>WENV181209130
OFBD01007711
[OFBD] metagenome; hydrothermal vent
596
511
-
Tyr
GTA
[ENA]
¡û
>WENV181209452
OFBE01003415
[OFBE] metagenome; hydrothermal vent
555
470
-
Tyr
GTA
[ENA]
¡û
>WENV181210153
OFBG01006991
[OFBG] metagenome; hydrothermal vent
697
780
+
Tyr
GTA
[ENA]
¡û
>WENV181210389
OFBH01001668
[OFBH] metagenome; hydrothermal vent
19
104
+
Tyr
GTA
[ENA]
¡û
>WENV181211354
OFBK01002553
[OFBK] metagenome; hydrothermal vent
1338
1421
+
Tyr
GTA
[ENA]
¡û
>WENV181211890
OFBM01000867
[OFBM] metagenome; hydrothermal vent
2044
2129
+
Tyr
GTA
[ENA]
¡û
>WENV181222851
OFDC01000402
[OFDC] hot springs metagenome; Water
3661
3747
+
Tyr
GTA
[ENA]
¡û
>WENV181225116
OFDH01005135
[OFDH] metagenome; hydrothermal vent
1096
1011
-
Tyr
GTA
[ENA]
¡û
>WENV181226524
OFDL01005880
[OFDL] metagenome; hydrothermal vent
635
552
-
Tyr
GTA
[ENA]
¡û
>WENV181229152
OFEJ01000787
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
9320
9404
+
Tyr
GTA
[ENA]
¡û
>WENV181285379
OFGS01000076
[OFGS] hot springs metagenome; Water and soil
13498
13412
-
Tyr
GTA
[ENA]
¡û
>WENV181405205
OGCB01025710
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
295
379
+
Tyr
GTA
[ENA]
¡û
>WENV181408595
OGCH01006320
[OGCH] hot springs metagenome; hot springs
96
12
-
Tyr
GTA
[ENA]
¡û
>WENV181409066
OGCH01043181
[OGCH] hot springs metagenome; hot springs
96
12
-
Tyr
GTA
[ENA]
¡û
>W08004315
ABHJ01000001
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
310408
310494
+
Tyr
GTA
[ENA]
¡û
>WENV170574071
FLYM01003327
[FLYM] hot springs metagenome; Sediment
303
217
-
Tyr
GTA
[ENA]
¡û
>W141730229
JNIE01000006
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
855
771
-
Tyr
GTA
[ENA]
¡û
>C141011687
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1307028
1307112
+
Tyr
GTA
-
¡û
>W1911493347
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5811
5727
-
Tyr
GTA
[ENA]
¡û
>W2011154298
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5811
5727
-
Tyr
GTA
[ENA]
¡û
>W2011392451
RCCJ01000001
Aquificota
Hydrogenivirga caldilitoris DSM 16510 [RCCJ]
1736152
1736238
+
Tyr
GTA
[ENA]
¡û
>C211344107
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
1712673
1712587
-
Tyr
GTA
-
¡û
>C211344167
CP076324
Aquificota
Aquificae bacterium [CP076324]
65775
65689
-
Tyr
GTA
-
¡û
>C10107857
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
901251
901337
+
Tyr
GTA
-
¡û
>C11111330
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
901241
901327
+
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK