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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68984 (18 seq.)
>WENV170437764
CEUU01065585
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
479
565
+
Leu
CAA
[ENA]
¡û
>WENV170443177
CEUW01098439
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2994
3080
+
Leu
CAA
[ENA]
¡û
>WENV170890629
MDTD01013101
[MDTD] marine metagenome; seawater
3973
3887
-
Leu
CAA
[ENA]
¡û
>C191134776
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1940371
1940455
+
Leu
CAA
-
¡û
>C151013058
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1466276
1466192
-
Leu
CAA
[Ensembl]
¡û
>W2011431970
RJJJ01000016
Bacteroidota
Ornithobacterium rhinotracheale LMG 18856 [RJJJ]
13541
13457
-
Leu
CAA
[ENA]
¡û
>W2011431982
RJJK01000003
Bacteroidota
Ornithobacterium rhinotracheale LMG 18861 [RJJK]
234061
234145
+
Leu
CAA
[ENA]
¡û
>W2011432052
RJJL01000041
Bacteroidota
Ornithobacterium rhinotracheale LMG 19032 [RJJL]
4520
4604
+
Leu
CAA
[ENA]
¡û
>W2011858970
UNSC01000001
Bacteroidota
Candidatus Ornithobacterium hominis OH-22767 [UNSC]
212426
212510
+
Leu
CAA
[ENA]
¡û
>W2011859006
UNSD01000002
Bacteroidota
Candidatus Ornithobacterium hominis OH-22803 [UNSD]
150441
150525
+
Leu
CAA
[ENA]
¡û
>W2012433802
WTFG01000001
Bacteroidota
Flavobacteriaceae bacterium Ap0902 [WTFG]
56627
56543
-
Leu
CAA
[ENA]
¡û
>C231352341
CP094844
Bacteroidota
Ornithobacterium rhinotracheale A171 [CP094844]
505018
505102
+
Leu
CAA
-
¡û
>C231352420
CP094845
Bacteroidota
Ornithobacterium rhinotracheale 97 [CP094845]
62994
62910
-
Leu
CAA
-
¡û
>C231352436
CP094846
Bacteroidota
Ornithobacterium rhinotracheale K223 [CP094846]
2080355
2080439
+
Leu
CAA
-
¡û
>C231457974
CP102745
Bacteroidota
Ornithobacterium rhinotracheale IRI-Sh [CP102745]
1466215
1466131
-
Leu
CAA
-
¡û
>C121010259
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
508844
508928
+
Leu
CAA
[Ensembl]
¡û
>W1610029746
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
219042
218958
-
Leu
CAA
[ENA]
¡û
>W1710027116
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
219042
218958
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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