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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68998 (18 seq.)
>C171083821
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
1410742
1410828
+
Leu
TAA
-
¡û
>C171094233
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1347960
1348046
+
Leu
TAA
-
¡û
>WENV180829340
ODKA01123063
[ODKA] human metagenome; G_DNA_Stool
63
149
+
Leu
TAA
[ENA]
¡û
>WENV181469072
OGES01044249
[OGES] metagenome; Human gut stool
120
206
+
Leu
TAA
[ENA]
¡û
>WENV181883503
OGXI01005843
[OGXI] human gut metagenome; faeces
560
646
+
Leu
TAA
[ENA]
¡û
>WENV181928933
OGYO01006482
[OGYO] human gut metagenome; faeces
3774
3688
-
Leu
TAA
[ENA]
¡û
>WENV181973203
OHAA01016883
[OHAA] human gut metagenome; faeces
1756
1670
-
Leu
TAA
[ENA]
¡û
>WENV183330841
OLWB01026881
[OLWB] human gut metagenome; faeces
442
528
+
Leu
TAA
[ENA]
¡û
>W09119200
ACDP01000010
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
126580
126494
-
Leu
TAA
[ENA]
¡û
>W09119239
ACDQ01000007
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
47613
47527
-
Leu
TAA
[ENA]
¡û
>W2010264372
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1015309
1015223
-
Leu
TAA
[ENA]
¡û
>W2010288967
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
787735
787649
-
Leu
TAA
[ENA]
¡û
>C201107556
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
1339396
1339310
-
Leu
TAA
-
¡û
>C231399246
CP098242
Betaproteobacteria
Oxalobacter vibrioformis WoOx3 [CP098242]
211124
211210
+
Leu
TAA
-
¡û
>C231399306
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
1195136
1195222
+
Leu
TAA
-
¡û
>C231399370
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
932912
932826
-
Leu
TAA
-
¡û
>C231399398
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
1615910
1615996
+
Leu
TAA
-
¡û
>C231399442
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
1432673
1432759
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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