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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.69000 (29 seq.)
>W131178084
ARLH01000067
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
36630
36544
-
Leu
CAA
[ENA]
¡û
>C171083841
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
669735
669649
-
Leu
CAA
-
¡û
>C171094253
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
606951
606865
-
Leu
CAA
-
¡û
>WENV180341578
OBLI01167555
[OBLI] pig gut metagenome; faeces
114
28
-
Leu
CAA
[ENA]
¡û
>WENV181149729
OEHT01230653
[OEHT] human metagenome; G_DNA_Stool
217
131
-
Leu
CAA
[ENA]
¡û
>WENV181882760
OGXI01000376
[OGXI] human gut metagenome; faeces
23348
23434
+
Leu
CAA
[ENA]
¡û
>WENV181913922
OGYE01046838
[OGYE] human gut metagenome; faeces
383
469
+
Leu
CAA
[ENA]
¡û
>WENV181973310
OHAA01025786
[OHAA] human gut metagenome; faeces
965
879
-
Leu
CAA
[ENA]
¡û
>WENV182888165
OKSD01084519
[OKSD] human gut metagenome; faeces
465
551
+
Leu
CAA
[ENA]
¡û
>WENV183576005
OOCI01019096
[OOCI] human gut metagenome; human gut
1532
1446
-
Leu
CAA
[ENA]
¡û
>WENV170069270
CDZP01037486
[CDZP] gut metagenome; human stools
50
136
+
Leu
CAA
[ENA]
¡û
>WENV170070625
CDZQ01030980
[CDZQ] gut metagenome; human stools
230
144
-
Leu
CAA
[ENA]
¡û
>W09119205
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
237549
237635
+
Leu
CAA
[ENA]
¡û
>W09119247
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
413533
413619
+
Leu
CAA
[ENA]
¡û
>W2010264345
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1755790
1755876
+
Leu
CAA
[ENA]
¡û
>W2010288939
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
1726531
1726617
+
Leu
CAA
[ENA]
¡û
>C201107536
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
2084523
2084609
+
Leu
CAA
-
¡û
>C231399326
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
454102
454016
-
Leu
CAA
-
¡û
>C231399340
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
1693316
1693402
+
Leu
CAA
-
¡û
>C231399411
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
857887
857801
-
Leu
CAA
-
¡û
>C231399460
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
674654
674568
-
Leu
CAA
-
¡û
>C231399482
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
1625800
1625886
+
Leu
CAA
-
¡û
>C231399566
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
439440
439354
-
Leu
CAA
-
¡û
>C231399584
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1611055
1611141
+
Leu
CAA
-
¡û
>C231399654
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
774703
774617
-
Leu
CAA
-
¡û
>C231399712
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
648394
648308
-
Leu
CAA
-
¡û
>C231399762
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
587163
587077
-
Leu
CAA
-
¡û
>W1610074139
BCWK01000020
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
36227
36141
-
Leu
CAA
[ENA]
¡û
>W1710071257
BCWK01000020
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
36227
36141
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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