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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.69153 (110 seq.)
>W1710891798
LNDA01000097
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
15601
15515
-
Leu
CAA
[ENA]
¡û
>W1711739090
MUBO01000181
Actinomycetota
Streptomyces daghestanicus [MUBO]
7121
7035
-
Leu
CAA
[ENA]
¡û
>C014849
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
2040417
2040331
-
Leu
CAA
[Ensembl]
¡û
>WENV180030484
FTJM01086032
[FTJM] metagenome; soil
116
202
+
Leu
CAA
[ENA]
¡û
>WENV180031957
FTJU01002080
[FTJU] metagenome; soil
15631
15545
-
Leu
CAA
[ENA]
¡û
>WENV180031992
FTJU01003237
[FTJU] metagenome; soil
1346
1261
-
Leu
CAA
[ENA]
¡û
>W141168709
AXVD01000015
Actinomycetota
Nocardia sp. CNY236 [AXVD]
85583
85669
+
Leu
CAA
[ENA]
¡û
>C181200272
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
1587037
1587123
+
Leu
CAA
-
¡û
>W141759285
JNZF01000005
Actinomycetota
Nocardia carnea carneus [JNZF]
788632
788546
-
Leu
CAA
[ENA]
¡û
>W141760928
JOAJ01000008
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
392261
392175
-
Leu
CAA
[ENA]
¡û
>W141767048
JOEJ01000008
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
95783
95869
+
Leu
CAA
[ENA]
¡û
>W1910433917
FVWC01001761
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
291
205
-
Leu
CAA
[ENA]
¡û
>W1911422401
NXEG01000001
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
936296
936382
+
Leu
CAA
[ENA]
¡û
>W1911422460
NXEH01000001
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
469499
469585
+
Leu
CAA
[ENA]
¡û
>W1911573049
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
486934
486848
-
Leu
CAA
[ENA]
¡û
>W2010149359
CAACYE020000001
Actinomycetota
Nocardia farcinica 3012STDY6733949 [CAACYE]
5110866
5110780
-
Leu
CAA
[ENA]
¡û
>W2010470650
JAAGUX010000016
Actinomycetota
Nocardia cyriacigeorgica CNM20110649 [JAAGUX]
102140
102226
+
Leu
CAA
[ENA]
¡û
>W2010470699
JAAGUY010000018
Actinomycetota
Nocardia cyriacigeorgica CNM20110648 [JAAGUY]
112872
112958
+
Leu
CAA
[ENA]
¡û
>W2010470770
JAAGUZ010000100
Actinomycetota
Nocardia cyriacigeorgica CNM20110639 [JAAGUZ]
15965
15879
-
Leu
CAA
[ENA]
¡û
>W2010579844
JAAXOO010000007
Actinomycetota
Nocardia speluncae DSM 45078 [JAAXOO]
123165
123251
+
Leu
CAA
[ENA]
¡û
>W2010580038
JAAXOS010000015
Actinomycetota
Nocardia gamkensis DSM 44956 [JAAXOS]
98427
98341
-
Leu
CAA
[ENA]
¡û
>W2010685298
JACETW010000008
Actinomycetota
Nocardia farcinica JNQH325 [JACETW]
122077
122163
+
Leu
CAA
[ENA]
¡û
>W2010792094
LWUB01000010
Actinomycetota
Nocardia gamkensis NRRL B-24450 [LWUB]
111663
111749
+
Leu
CAA
[ENA]
¡û
>W2011142759
NXEG01000001
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
936296
936382
+
Leu
CAA
[ENA]
¡û
>W2011142818
NXEH01000001
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
469499
469585
+
Leu
CAA
[ENA]
¡û
>W2011183490
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
486934
486848
-
Leu
CAA
[ENA]
¡û
>W2011838838
UGVK01000001
Actinomycetota
Rhodococcus rhodochrous NCTC630 [UGVK]
3262907
3262993
+
Leu
CAA
[ENA]
¡û
>W2012156876
VUOS01000022
Actinomycetota
Nocardia sp. CY41 [VUOS]
127596
127682
+
Leu
CAA
[ENA]
¡û
>W2012308360
WEGK01000009
Actinomycetota
Nocardia sp. RB20 [WEGK]
116942
117028
+
Leu
CAA
[ENA]
¡û
>W2110031462
BMMH01000028
Actinomycetota
Nocardia jinanensis CGMCC 4.3508 [BMMH]
15667
15581
-
Leu
CAA
[ENA]
¡û
>W2110269345
JACVEM010000014
Actinomycetota
Nocardia farcinica JNQH326 [JACVEM]
122010
122096
+
Leu
CAA
[ENA]
¡û
>W2110332331
JADLPB010000024
Actinomycetota
Nocardia farcinica BJ06-0054 [JADLPB]
46220
46134
-
Leu
CAA
[ENA]
¡û
>W2110332372
JADLPC010000011
Actinomycetota
Nocardia farcinica BJ06-0055 [JADLPC]
84509
84595
+
Leu
CAA
[ENA]
¡û
>W2110332446
JADLPD010000018
Actinomycetota
Nocardia farcinica BJ06-0057 [JADLPD]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110332496
JADLPE010000019
Actinomycetota
Nocardia farcinica BJ06-0060 [JADLPE]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110332713
JADLPJ010000022
Actinomycetota
Nocardia farcinica BJ06-0096 [JADLPJ]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110332825
JADLPL010000026
Actinomycetota
Nocardia farcinica BJ06-0099 [JADLPL]
55589
55675
+
Leu
CAA
[ENA]
¡û
>W2110332861
JADLPM010000013
Actinomycetota
Nocardia farcinica BJ06-0101 [JADLPM]
122314
122400
+
Leu
CAA
[ENA]
¡û
>W2110333068
JADLPQ010000011
Actinomycetota
Nocardia beijingensis BJ06-0111 [JADLPQ]
89291
89207
-
Leu
CAA
[ENA]
¡û
>W2110333418
JADLPX010000012
Actinomycetota
Nocardia farcinica BJ06-0126 [JADLPX]
123660
123746
+
Leu
CAA
[ENA]
¡û
>W2110333507
JADLPZ010000014
Actinomycetota
Nocardia farcinica BJ06-0128 [JADLPZ]
70236
70150
-
Leu
CAA
[ENA]
¡û
>W2110333556
JADLQA010000013
Actinomycetota
Nocardia farcinica BJ06-0129 [JADLQA]
70236
70150
-
Leu
CAA
[ENA]
¡û
>W2110333865
JADLQG010000015
Actinomycetota
Nocardia farcinica BJ06-0135 [JADLQG]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110333954
JADLQI010000012
Actinomycetota
Nocardia farcinica BJ06-0137 [JADLQI]
46620
46534
-
Leu
CAA
[ENA]
¡û
>W2110334002
JADLQJ010000016
Actinomycetota
Nocardia farcinica BJ06-0138 [JADLQJ]
26283
26197
-
Leu
CAA
[ENA]
¡û
>W2110334063
JADLQK010000008
Actinomycetota
Nocardia farcinica BJ06-0139 [JADLQK]
124128
124214
+
Leu
CAA
[ENA]
¡û
>W2110334104
JADLQL010000005
Actinomycetota
Nocardia flavorosea BJ06-0141 [JADLQL]
92949
93035
+
Leu
CAA
[ENA]
¡û
>W2110334512
JADLQT010000010
Actinomycetota
Nocardia farcinica BJ06-0151 [JADLQT]
124090
124176
+
Leu
CAA
[ENA]
¡û
>W2110334759
JADLQY010000019
Actinomycetota
Nocardia farcinica N-1 [JADLQY]
82111
82197
+
Leu
CAA
[ENA]
¡û
>W2110334807
JADLQZ010000014
Actinomycetota
Nocardia farcinica N-3 [JADLQZ]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110334866
JADLRA010000014
Actinomycetota
Nocardia farcinica N-4 [JADLRA]
46215
46129
-
Leu
CAA
[ENA]
¡û
>W2110334949
JADLRC010000011
Actinomycetota
Nocardia farcinica N-9 [JADLRC]
46339
46253
-
Leu
CAA
[ENA]
¡û
>W2110335112
JADLRF010000673
Actinomycetota
Nocardia elegans N-12 [JADLRF]
263
177
-
Leu
CAA
[ENA]
¡û
>W2110335156
JADLRG010000012
Actinomycetota
Nocardia farcinica N-14 [JADLRG]
120956
121042
+
Leu
CAA
[ENA]
¡û
>W2110335534
JADLRN010000009
Actinomycetota
Nocardia farcinica N-23 [JADLRN]
124094
124180
+
Leu
CAA
[ENA]
¡û
>W2110563231
JAGPOX010000038
Actinomycetota
Nocardia sp. ncl2 [JAGPOX]
49103
49189
+
Leu
CAA
[ENA]
¡û
>W2110690340
JAINZY010000012
Actinomycetota
Nocardia sp. CA2R105 [JAINZY]
114092
114178
+
Leu
CAA
[ENA]
¡û
>W2110695667
JAIRBQ010000059
Actinomycetota
Nocardia sp. JCM 34519 [JAIRBQ]
32888
32974
+
Leu
CAA
[ENA]
¡û
>C231230664
CP086599
Actinomycetota
Nocardia farcinica SZ 1509 [CP086599]
1917319
1917233
-
Leu
CAA
-
¡û
>C241010039
AP026976
Actinomycetota
Nocardia sputorum IFM12275 [AP026976]
5944138
5944054
-
Leu
CAA
-
¡û
>C241106138
CP046172
Actinomycetota
Nocardia arthritidis AUSMDU00012717 [CP046172]
3598614
3598528
-
Leu
CAA
-
¡û
>C241200183
CP107785
Actinomycetota
Nocardia sp. NBC_00565 [CP107785]
943321
943235
-
Leu
CAA
-
¡û
>C241200963
CP107852
Actinomycetota
Nocardia sp. NBC_00508 [CP107852]
1137708
1137794
+
Leu
CAA
-
¡û
>C241203665
CP107932
Actinomycetota
Nocardia sp. NBC_00416 [CP107932]
7266044
7265958
-
Leu
CAA
-
¡û
>C241203974
CP107939
Actinomycetota
Nocardia sp. NBC_00403 [CP107939]
3842279
3842193
-
Leu
CAA
-
¡û
>C241214000
CP109149
Actinomycetota
Nocardia vinacea NBC 01743 [CP109149]
9929429
9929343
-
Leu
CAA
-
¡û
>C241214261
CP109162
Actinomycetota
Nocardia sp. NBC_01730 [CP109162]
8541526
8541440
-
Leu
CAA
-
¡û
>C241216213
CP109441
Actinomycetota
Nocardia vinacea NBC_01482 [CP109441]
7116880
7116794
-
Leu
CAA
-
¡û
>C161106813
LN868938
Actinomycetota
Nocardia farcinica NCTC11134 [LN868938]
2249075
2249161
+
Leu
CAA
[Ensembl]
¡û
>W121125389
BAFZ01000048
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
34868
34782
-
Leu
CAA
[ENA]
¡û
>W121125709
BAGF01000032
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
82045
81961
-
Leu
CAA
[ENA]
¡û
>W121126121
BAGN01000088
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
3246
3160
-
Leu
CAA
[ENA]
¡û
>W1610078568
BDAZ01000025
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
157438
157524
+
Leu
CAA
[ENA]
¡û
>W1610078605
BDBA01000037
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
32673
32759
+
Leu
CAA
[ENA]
¡û
>W1610078668
BDBB01000015
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
75785
75871
+
Leu
CAA
[ENA]
¡û
>W1610079063
BDBJ01000010
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
117846
117932
+
Leu
CAA
[ENA]
¡û
>W1610079236
BDBM01000014
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
120548
120634
+
Leu
CAA
[ENA]
¡û
>W1610079352
BDBO01000124
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
48781
48867
+
Leu
CAA
[ENA]
¡û
>W1610079426
BDBQ01000036
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
80011
79925
-
Leu
CAA
[ENA]
¡û
>W1610079816
BDBX01000039
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
90246
90332
+
Leu
CAA
[ENA]
¡û
>W1610079858
BDBY01000203
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
2058
1972
-
Leu
CAA
[ENA]
¡û
>W1610079893
BDBZ01000004
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
14941
15027
+
Leu
CAA
[ENA]
¡û
>W1610080063
BDCC01000022
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
7683
7597
-
Leu
CAA
[ENA]
¡û
>W1610080311
BDCG01000018
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
254638
254552
-
Leu
CAA
[ENA]
¡û
>W1610080455
BDCJ01000010
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
103174
103260
+
Leu
CAA
[ENA]
¡û
>W1610080519
BDCK01000034
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
64257
64171
-
Leu
CAA
[ENA]
¡û
>W1610080542
BDCL01000016
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
95684
95770
+
Leu
CAA
[ENA]
¡û
>W1610080863
BDCT01000035
Actinomycetota
Nocardia arizonensis [BDCT]
37935
37849
-
Leu
CAA
[ENA]
¡û
>W1610080897
BDCU01000019
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
12023
12109
+
Leu
CAA
[ENA]
¡û
>W1610617919
LGYZ01000009
Actinomycetota
Nocardia arizonensis [LGYZ]
37961
37875
-
Leu
CAA
[ENA]
¡û
>W1610752163
LNDA01000097
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
15601
15515
-
Leu
CAA
[ENA]
¡û
>W1710077127
BDAZ01000025
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
157438
157524
+
Leu
CAA
[ENA]
¡û
>W1710077164
BDBA01000037
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
32673
32759
+
Leu
CAA
[ENA]
¡û
>W1710077227
BDBB01000015
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
75785
75871
+
Leu
CAA
[ENA]
¡û
>W1710077622
BDBJ01000010
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
117846
117932
+
Leu
CAA
[ENA]
¡û
>W1710077795
BDBM01000014
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
120548
120634
+
Leu
CAA
[ENA]
¡û
>W1710077911
BDBO01000124
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
48781
48867
+
Leu
CAA
[ENA]
¡û
>W1710077985
BDBQ01000036
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
80011
79925
-
Leu
CAA
[ENA]
¡û
>W1710078375
BDBX01000039
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
90246
90332
+
Leu
CAA
[ENA]
¡û
>W1710078417
BDBY01000203
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
2058
1972
-
Leu
CAA
[ENA]
¡û
>W1710078452
BDBZ01000004
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
14941
15027
+
Leu
CAA
[ENA]
¡û
>W1710078622
BDCC01000022
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
7683
7597
-
Leu
CAA
[ENA]
¡û
>W1710078870
BDCG01000018
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
254638
254552
-
Leu
CAA
[ENA]
¡û
>W1710079014
BDCJ01000010
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
103174
103260
+
Leu
CAA
[ENA]
¡û
>W1710079078
BDCK01000034
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
64257
64171
-
Leu
CAA
[ENA]
¡û
>W1710079101
BDCL01000016
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
95684
95770
+
Leu
CAA
[ENA]
¡û
>W1710079422
BDCT01000035
Actinomycetota
Nocardia arizonensis [BDCT]
37935
37849
-
Leu
CAA
[ENA]
¡û
>W1710079456
BDCU01000019
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
12023
12109
+
Leu
CAA
[ENA]
¡û
>W1710599641
FTOW01000002
Actinomycetota
Nocardia farcinica [FTOW]
572074
572160
+
Leu
CAA
[ENA]
¡û
>W1710744094
LGYZ01000009
Actinomycetota
Nocardia arizonensis [LGYZ]
37961
37875
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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