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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.69442 (19 seq.)
>W131055682
ANCA01000004
Bacillota
Weissella ceti NC36 [ANCA]
131620
131535
-
Leu
CAA
[ENA]
¡û
>C181143161
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
987202
987287
+
Leu
CAA
-
¡û
>C181143194
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
431256
431171
-
Leu
CAA
-
¡û
>C151045727
CP009223
Bacillota
Weissella ceti WS74 [CP009223]
32108
32193
+
Leu
CAA
[Ensembl]
¡û
>C151045795
CP009224
Bacillota
Weissella ceti WS105 [CP009224]
31417
31502
+
Leu
CAA
[Ensembl]
¡û
>C211059775
CP043431
Bacillota
Weissella koreensis SK [CP043431]
945852
945937
+
Leu
CAA
-
¡û
>C211059808
CP043431
Bacillota
Weissella koreensis SK [CP043431]
388918
388833
-
Leu
CAA
-
¡û
>C211137934
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
895120
895203
+
Leu
CAA
-
¡û
>C211137938
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
1123477
1123562
+
Leu
CAA
-
¡û
>C211338058
CP075544
Bacillota
Weissella sp. W-1 [CP075544]
31959
32044
+
Leu
CAA
-
¡û
>C241138607
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
553214
553299
+
Leu
CAA
-
¡û
>C241138629
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1551089
1551004
-
Leu
CAA
-
¡û
>C241378276
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
965187
965272
+
Leu
CAA
-
¡û
>C241378309
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
410173
410088
-
Leu
CAA
-
¡û
>WENV11100339
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
1398
1313
-
Leu
CAA
[ENA]
¡û
>C11123745
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922816
922901
+
Leu
CAA
[Ensembl]
¡û
>C11123778
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
386654
386569
-
Leu
CAA
[Ensembl]
¡û
>W121082010
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
95556
95641
+
Leu
CAA
[ENA]
¡û
>W121082045
AKGG01000014
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
205544
205459
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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