This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6995 (65 seq.)
>W1711109941
LTVC01000005
Bacillota
Streptococcus sp. HMSC067A03 [LTVC]
262
173
-
Ser
TGA
[ENA]
¡û
>W1711964390
NCUX01000012
Bacillota
Streptococcus oralis subsp. dentisani [NCUX]
268
357
+
Ser
TGA
[ENA]
¡û
>W1711964397
NCUX01000024
Bacillota
Streptococcus oralis subsp. dentisani [NCUX]
36531
36442
-
Ser
TGA
[ENA]
¡û
>W1711964498
NCUZ01000013
Bacillota
Streptococcus oralis subsp. dentisani [NCUZ]
37263
37174
-
Ser
TGA
[ENA]
¡û
>W1711964510
NCUZ01000015
Bacillota
Streptococcus oralis subsp. dentisani [NCUZ]
88494
88405
-
Ser
TGA
[ENA]
¡û
>W1711964589
NCVB01000015
Bacillota
Streptococcus oralis subsp. dentisani [NCVB]
37191
37102
-
Ser
TGA
[ENA]
¡û
>W1711964611
NCVB01000017
Bacillota
Streptococcus oralis subsp. dentisani [NCVB]
97990
97901
-
Ser
TGA
[ENA]
¡û
>W1712069750
NGMP01000001
Bacillota
Enterococcus faecalis [NGMP]
273673
273762
+
Ser
TGA
[ENA]
¡û
>W1712097223
NIBQ01000004
Bacillota
Enterococcus sp. 9D6_DIV0238 [NIBQ]
4312
4401
+
Ser
TGA
[ENA]
¡û
>W131166284
ARCI01000024
Bacillota
Streptococcus thoraltensis DSM 12221 [ARCI]
29348
29259
-
Ser
TGA
[ENA]
¡û
>WENV180283555
OBID01000693
[OBID] metagenome; sludge
197
108
-
Ser
TGA
[ENA]
¢þ
>WENV180728956
ODGU01130515
[ODGU] human metagenome; G_DNA_Supragingival plaque
253
164
-
Ser
TGA
[ENA]
¢þ
>W141075824
ATBC01000634
Bacillota
Lactococcus cremoris subsp. cremoris TIFN5 [ATBC]
335
246
-
Ser
TGA
[ENA]
¡û
>WENV180801760
ODJD01150321
[ODJD] human metagenome; G_DNA_Supragingival plaque
175
86
-
Ser
TGA
[ENA]
¢þ
>W141230149
BASU01000024
Bacillota
Streptococcus constellatus subsp. constellatus SK53 [BASU]
17952
17863
-
Ser
TGA
[ENA]
¡û
>W141230158
BASU01000032
Bacillota
Streptococcus constellatus subsp. constellatus SK53 [BASU]
11560
11471
-
Ser
TGA
[ENA]
¡û
>W141245690
CALL01000040
Bacillota
Lactococcus raffinolactis 4877 [CALL]
1021
932
-
Ser
TGA
[ENA]
¡û
>WENV182719339
OJPM01034368
[OJPM] human gut metagenome; stool sample
487
578
+
Ser
TGA
[ENA]
¢þ
>C181064928
CP022435
Bacillota
Streptococcus uberis NZ01 [CP022435]
467640
467729
+
Ser
TGA
-
¡û
>C181080408
CP023392
Bacillota
Lactococcus raffinolactis WiKim0068 [CP023392]
1054440
1054529
+
Ser
TGA
-
¡û
>C181162694
CP028160
Bacillota
Lactococcus lactis subsp. lactis 14B4 [CP028160]
1271030
1271119
+
Ser
TGA
-
¡û
>C181178084
CP029398
Bacillota
Streptococcus suis HN105 [CP029398]
23024
23113
+
Ser
TGA
-
¡û
>W141712514
JMRL01000001
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
1845
1934
+
Ser
TGA
[ENA]
¡û
>W141712529
JMRL01000023
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
8245
8156
-
Ser
TGA
[ENA]
¡û
>W1910033533
BEDT01000004
Bacillota
Lactococcus reticulitermitis Rs-Y01 [BEDT]
1150
1061
-
Ser
TGA
[ENA]
¡û
>W1910583166
JXJT01000010
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JXJT]
60557
60646
+
Ser
TGA
[ENA]
¡û
>W1910583276
JXJW01000007
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
61684
61595
-
Ser
TGA
[ENA]
¡û
>W1910583296
JXJW01000023
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
227
316
+
Ser
TGA
[ENA]
¡û
>W1910583311
JXJX01000001
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
242
153
-
Ser
TGA
[ENA]
¡û
>W1910583350
JXJY01000011
Bacillota
Lactococcus raffinolactis ATCC 43920 [JXJY]
588
499
-
Ser
TGA
[ENA]
¡û
>W1910899866
NGKA01000013
Bacillota
Vagococcus elongatus CCUG 51432 [NGKA]
328
417
+
Ser
TGA
[ENA]
¡û
>W1910899873
NGKA01000013
Bacillota
Vagococcus elongatus CCUG 51432 [NGKA]
940
1029
+
Ser
TGA
[ENA]
¡û
>W1911244475
NSIW01000001
Bacillota
Streptococcus salivarius HS0302 [NSIW]
20826
20915
+
Ser
TGA
[ENA]
¡û
>W1911494573
OBKP01000001
Bacillota
Lactococcus piscium CMTALT17 [OBKP]
28522
28611
+
Ser
TGA
[ENA]
¡û
>W1911494587
OBKP01000047
Bacillota
Lactococcus piscium CMTALT17 [OBKP]
21106
21017
-
Ser
TGA
[ENA]
¡û
>W1911532439
OGVB01000001
Bacillota
Lactococcus piscium CMTALT02 [OGVB]
28491
28580
+
Ser
TGA
[ENA]
¡û
>W1911532451
OGVB01000018
Bacillota
Lactococcus piscium CMTALT02 [OGVB]
110937
110848
-
Ser
TGA
[ENA]
¡û
>W1810069564
PEBL01000011
Bacillota
Streptococcus macedonicus 211MA [PEBL]
459
548
+
Ser
TGA
[ENA]
¡û
>W1810316276
PTYD01000159
Bacillota
Enterococcus faecium CVM N52769 [PTYD]
1062
1151
+
Ser
TGA
[ENA]
¡û
>W1810319919
PUAT01000050
Bacillota
Enterococcus faecium CVM N55290 [PUAT]
726
637
-
Ser
TGA
[ENA]
¡û
>W1810320070
PUAV01000142
Bacillota
Enterococcus faecium CVM N55317 [PUAV]
1062
1151
+
Ser
TGA
[ENA]
¡û
>C151104003
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
28518
28607
+
Ser
TGA
[Ensembl]
¡û
>C151104050
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
1701901
1701812
-
Ser
TGA
[Ensembl]
¡û
>W1510090509
CEDG01000004
Bacillota
Streptococcus suis LS0L [CEDG]
61018
60929
-
Ser
TGA
[ENA]
¡û
>W1510092478
CEEZ01000025
Bacillota
Streptococcus suis LS5J [CEEZ]
43501
43412
-
Ser
TGA
[ENA]
¡û
>W1510772298
JATB01000011
Bacillota
Streptococcus uberis 6736 [JATB]
69254
69343
+
Ser
TGA
[ENA]
¡û
>W1510772438
JATE01000008
Bacillota
Streptococcus uberis B190 [JATE]
91177
91266
+
Ser
TGA
[ENA]
¡û
>W1511359388
JRYN01000001
Bacillota
Streptococcus hongkongensis CAIM 1895 [JRYN]
880684
880595
-
Ser
TGA
[ENA]
¡û
>W1511450165
JVBU01000018
Bacillota
Streptococcus intermedius 567_SINT [JVBU]
262
173
-
Ser
TGA
[ENA]
¡û
>W11174318
AFUO01000001
Bacillota
Streptococcus mitis bv. 2 str. F0392 [AFUO]
1649479
1649568
+
Ser
TGA
[ENA]
¡û
>W11174335
AFUO01000001
Bacillota
Streptococcus mitis bv. 2 str. F0392 [AFUO]
1071905
1071816
-
Ser
TGA
[ENA]
¡û
>W121007452
AGAE01000008
Bacillota
Streptococcus sp. oral taxon 058 oral taxon 058 str. F0407 [AGAE]
558
469
-
Ser
TGA
[ENA]
¡û
>W1610072982
BCVN01000011
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
46090
46179
+
Ser
TGA
[ENA]
¡û
>W1610309950
FFRY01000014
Bacillota
Streptococcus pneumoniae [FFRY]
51592
51503
-
Ser
TGA
[ENA]
¡û
>W1610400205
FIHP01000016
Bacillota
Streptococcus suis [FIHP]
43857
43768
-
Ser
TGA
[ENA]
¡û
>W1610404346
FILX01000091
Bacillota
Streptococcus suis [FILX]
863
774
-
Ser
TGA
[ENA]
¡û
>W1610514177
FLZT01000001
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
1764
1675
-
Ser
TGA
[ENA]
¡û
>W1610514214
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
6329
6240
-
Ser
TGA
[ENA]
¡û
>W1610635438
LITG01000103
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
503
592
+
Ser
TGA
[ENA]
¡û
>W1710070100
BCVN01000011
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
46090
46179
+
Ser
TGA
[ENA]
¡û
>W1710309717
FFRY01000014
Bacillota
Streptococcus pneumoniae [FFRY]
51592
51503
-
Ser
TGA
[ENA]
¡û
>W1710399972
FIHP01000016
Bacillota
Streptococcus suis [FIHP]
43857
43768
-
Ser
TGA
[ENA]
¡û
>W1710404113
FILX01000091
Bacillota
Streptococcus suis [FILX]
863
774
-
Ser
TGA
[ENA]
¡û
>W1710582079
FPKS01000010
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
3315
3226
-
Ser
TGA
[ENA]
¡û
>W1710770011
LITG01000103
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
503
592
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK