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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6999 (66 seq.)
>W1710934746
LOJN01000029
Bacillota
Lacticaseibacillus casei [LOJN]
9
100
+
Ser
GGA
[ENA]
¡û
>W131062349
ANJS01000159
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp219 [ANJS]
3636
3545
-
Ser
GGA
[ENA]
¡û
>W131062525
ANJX01000120
Bacillota
Lacticaseibacillus paracasei subsp. paracasei CNCM I-4270 [ANJX]
8
99
+
Ser
GGA
[ENA]
¡û
>W131062613
ANJY01000166
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp189 [ANJY]
245
336
+
Ser
GGA
[ENA]
¡û
>W131063444
ANKV01000037
Bacillota
Lacticaseibacillus paracasei subsp. tolerans Lpl7 [ANKV]
8
99
+
Ser
GGA
[ENA]
¡û
>W131063798
ANLG01000983
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp48 [ANLG]
98
189
+
Ser
GGA
[ENA]
¡û
>W1711093152
LTET01000060
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
42
133
+
Ser
GGA
[ENA]
¡û
>W1711097409
LTIR01000048
Bacillota
Lactobacillus sp. HMSC077C11 [LTIR]
2866
2775
-
Ser
GGA
[ENA]
¡û
>W1711098129
LTJI01000033
Bacillota
Lactobacillus sp. HMSC068B07 [LTJI]
13270
13179
-
Ser
GGA
[ENA]
¡û
>W1711588921
MODS01000063
Bacillota
Lacticaseibacillus casei [MODS]
71
162
+
Ser
GGA
[ENA]
¡û
>W1711629101
MPOP01000020
Bacillota
Lacticaseibacillus casei [MPOP]
445
536
+
Ser
GGA
[ENA]
¡û
>W1711999817
NDXH01000014
Bacillota
Lacticaseibacillus paracasei [NDXH]
295
386
+
Ser
GGA
[ENA]
¡û
>C171034641
CP014985
Bacillota
Lacticaseibacillus paracasei IIA [CP014985]
978511
978420
-
Ser
GGA
-
¡û
>C171051615
CP016823
Bacillota
Lacticaseibacillus rhamnosus LRB [CP016823]
493307
493398
+
Ser
GGA
-
¡û
>W141004420
AFYK01000058
Bacillota
Lacticaseibacillus casei 1·î21Æü [AFYK]
379
470
+
Ser
GGA
[ENA]
¡û
>WENV180136848
OATN01015610
[OATN] human gut metagenome; faeces
358
267
-
Ser
GGA
[ENA]
¢þ
>WENV180432699
OBWI01037552
[OBWI] human gut metagenome; faeces
118
27
-
Ser
GGA
[ENA]
¢þ
>WENV180452744
OBXK01000239
[OBXK] human gut metagenome; faeces
63
154
+
Ser
GGA
[ENA]
¢þ
>WENV182821874
OKBA01006829
[OKBA] human gut metagenome; human gut
755
664
-
Ser
GGA
[ENA]
¢þ
>WENV182860138
OKOR01000206
[OKOR] human gut metagenome; human gut
63
154
+
Ser
GGA
[ENA]
¢þ
>WENV182943763
OKVI01000775
[OKVI] human gut metagenome; human gut
164
255
+
Ser
GGA
[ENA]
¢þ
>WENV183511932
OMJG01015725
[OMJG] food metagenome; Cotija cheese
63
154
+
Ser
GGA
[ENA]
¢þ
>C191001789
AP018392
Bacillota
Lacticaseibacillus paracasei IJH-SONE68 [AP018392]
951843
951934
+
Ser
GGA
-
¡û
>C191034452
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
848336
848427
+
Ser
GGA
-
¡û
>W09123468
ACGY01000145
Bacillota
Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 [ACGY]
17500
17409
-
Ser
GGA
[ENA]
¡û
>W1910583965
JXRK01000126
Bacillota
Lacticaseibacillus paracasei INF 456 [JXRK]
215
306
+
Ser
GGA
[ENA]
¡û
>W1910621191
LKFC01000006
Bacillota
Lacticaseibacillus paracasei FAM10859 [LKFC]
423
514
+
Ser
GGA
[ENA]
¡û
>W1910621303
LKFE01000005
Bacillota
Lacticaseibacillus paracasei FAM18101 [LKFE]
28276
28367
+
Ser
GGA
[ENA]
¡û
>W1910621415
LKFG01000033
Bacillota
Lacticaseibacillus paracasei FAM18108 [LKFG]
203
294
+
Ser
GGA
[ENA]
¡û
>W1910621900
LKFP01000039
Bacillota
Lacticaseibacillus paracasei FAM18132 [LKFP]
187
278
+
Ser
GGA
[ENA]
¡û
>W1910622817
LKGG01000018
Bacillota
Lacticaseibacillus paracasei FAM3257 [LKGG]
311
402
+
Ser
GGA
[ENA]
¡û
>W1910623002
LKGJ01000057
Bacillota
Lacticaseibacillus paracasei FAM6161 [LKGJ]
43708
43617
-
Ser
GGA
[ENA]
¡û
>W1910623160
LKGM01000056
Bacillota
Lacticaseibacillus paracasei FAM7821 [LKGM]
755
664
-
Ser
GGA
[ENA]
¡û
>W1911118073
NOKL01000002
Bacillota
Lacticaseibacillus paracasei Lpc-37 [NOKL]
2795966
2796057
+
Ser
GGA
[ENA]
¡û
>W1911161587
NPOB01000077
Bacillota
Lacticaseibacillus paracasei subsp. paracasei NTU 101 [NPOB]
362
453
+
Ser
GGA
[ENA]
¡û
>W1911532130
OGTX02000202
Bacillota
Lacticaseibacillus rhamnosus [OGTX]
58733
58642
-
Ser
GGA
[ENA]
¡û
>W1810452843
PZQM01000032
Bacillota
Lacticaseibacillus rhamnosus LR2 [PZQM]
27
118
+
Ser
GGA
[ENA]
¡û
>W1810472541
QAGX01000001
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
135
226
+
Ser
GGA
[ENA]
¡û
>W1810473902
QAHU01000001
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
527
618
+
Ser
GGA
[ENA]
¡û
>W1810488444
QAZJ01000018
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
135
226
+
Ser
GGA
[ENA]
¡û
>W1810489428
QBAA01000001
Bacillota
Lactobacillus sp. DS13_6 [QBAA]
527
618
+
Ser
GGA
[ENA]
¡û
>W1810706177
QMJW01000058
Bacillota
Lacticaseibacillus paracasei KMB_623 [QMJW]
15653
15562
-
Ser
GGA
[ENA]
¡û
>C10108976
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
842925
843016
+
Ser
GGA
[Ensembl]
¡û
>W1511435148
JUIK01000200
Bacillota
Lacticaseibacillus rhamnosus Lr073 [JUIK]
5817
5726
-
Ser
GGA
[ENA]
¡û
>W1511435255
JUIN01000477
Bacillota
Lacticaseibacillus rhamnosus Lr032 [JUIN]
8
99
+
Ser
GGA
[ENA]
¡û
>W1511439932
JUON01000048
Bacillota
Lacticaseibacillus rhamnosus 906_LRHA [JUON]
41970
41879
-
Ser
GGA
[ENA]
¡û
>W1511441007
JUPZ01000015
Bacillota
Lacticaseibacillus casei 867_LCAS [JUPZ]
66708
66617
-
Ser
GGA
[ENA]
¡û
>W1511441723
JUQW01000054
Bacillota
Lacticaseibacillus paracasei 844_LCAS [JUQW]
403
312
-
Ser
GGA
[ENA]
¡û
>W11184939
BACQ01000027
Bacillota
Lacticaseibacillus zeae KCTC 3804 [BACQ]
17933
17842
-
Ser
GGA
[ENA]
¡û
>W121007312
AFZY01000088
Bacillota
Lacticaseibacillus rhamnosus ATCC 21052 [AFZY]
42
133
+
Ser
GGA
[ENA]
¡û
>W1610032416
AYZQ01000001
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
37
128
+
Ser
GGA
[ENA]
¡û
>W1610032921
AZCO01000023
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
32481
32390
-
Ser
GGA
[ENA]
¡û
>W1610045891
BBBX01000013
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
72187
72096
-
Ser
GGA
[ENA]
¡û
>W1610529560
JQCE01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
87415
87324
-
Ser
GGA
[ENA]
¡û
>W1610543464
JTHU01000057
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
2572
2481
-
Ser
GGA
[ENA]
¡û
>W1610543899
JTID01000008
Bacillota
Lacticaseibacillus rhamnosus [JTID]
88793
88702
-
Ser
GGA
[ENA]
¡û
>W1610544507
JTIP01000022
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
40560
40469
-
Ser
GGA
[ENA]
¡û
>W1610547452
JUIS01000277
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
8
99
+
Ser
GGA
[ENA]
¡û
>W1710029238
AYZQ01000001
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
37
128
+
Ser
GGA
[ENA]
¡û
>W1710030252
AZCO01000023
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
32481
32390
-
Ser
GGA
[ENA]
¡û
>W1710042732
BBBX01000013
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
72187
72096
-
Ser
GGA
[ENA]
¡û
>W1710631150
JQCE01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
87415
87324
-
Ser
GGA
[ENA]
¡û
>W1710646595
JTHU01000057
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
2572
2481
-
Ser
GGA
[ENA]
¡û
>W1710647030
JTID01000008
Bacillota
Lacticaseibacillus rhamnosus [JTID]
88793
88702
-
Ser
GGA
[ENA]
¡û
>W1710647638
JTIP01000022
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
40560
40469
-
Ser
GGA
[ENA]
¡û
>W1710650635
JUIS01000277
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
8
99
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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