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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.70057 (17 seq.)
>C171117506
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2532111
2532025
-
Leu
CAG
-
¡û
>C171117507
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2531938
2531852
-
Leu
CAG
-
¡û
>C171117508
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2531803
2531717
-
Leu
CAG
-
¡û
>C171117970
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
674218
674304
+
Leu
CAG
-
¡û
>C171117971
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
674391
674477
+
Leu
CAG
-
¡û
>C171117972
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
674526
674612
+
Leu
CAG
-
¡û
>WENV183705117
PDWI01001079
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
30038
30124
+
Leu
CAG
[ENA]
¢þ
>WENV183705435
PDWI01001546
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
36560
36474
-
Leu
CAG
[ENA]
¢þ
>WENV183716169
PDWI01291690
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
813
727
-
Leu
CAG
[ENA]
¢þ
>WENV183722556
PDWJ01138439
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1
87
+
Leu
CAG
[ENA]
¢þ
>W1911539856
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
527165
527251
+
Leu
CAG
[ENA]
¡û
>W1810786986
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
334730
334644
-
Leu
CAG
[ENA]
¡û
>W1810786987
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
334557
334471
-
Leu
CAG
[ENA]
¡û
>W1810786988
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
334423
334337
-
Leu
CAG
[ENA]
¡û
>W1710558503
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
114983
115069
+
Leu
CAG
[ENA]
¡û
>W1710558504
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
115157
115243
+
Leu
CAG
[ENA]
¡û
>W1710558505
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
115289
115375
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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