This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.70839 (111 seq.)
>W1710785499
LJHX01000080
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
8189
8103
-
Leu
CAG
[ENA]
¡û
>W1710870178
LMKH01000034
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
360565
360479
-
Leu
CAG
[ENA]
¡û
>W1710870390
LMKL01000009
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
31793
31707
-
Leu
CAG
[ENA]
¡û
>W1710870480
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
17518
17432
-
Leu
CAG
[ENA]
¡û
>W1710870898
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
240348
240434
+
Leu
CAG
[ENA]
¡û
>W1710870956
LMKX01000010
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
142020
142106
+
Leu
CAG
[ENA]
¡û
>W1710871201
LMLC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
652719
652805
+
Leu
CAG
[ENA]
¡û
>W1710871207
LMLD01000004
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
2160
2074
-
Leu
CAG
[ENA]
¡û
>W1710872300
LMLW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
681917
681831
-
Leu
CAG
[ENA]
¡û
>W1710877230
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
441566
441480
-
Leu
CAG
[ENA]
¡û
>W1710894108
LNFK01000048
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
562
648
+
Leu
CAG
[ENA]
¡û
>WENV180100545
OAOO01002844
[OAOO] marine metagenome; ENVO:00002010
112
198
+
Leu
CAG
[ENA]
¡û
>WENV180101397
OAOU01052183
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
314
228
-
Leu
CAG
[ENA]
¡û
>WENV180390979
OBPM01000296
[OBPM] marine metagenome; ENVO:00002010
2663
2749
+
Leu
CAG
[ENA]
¡û
>WENV180593893
OCOY01002277
[OCOY] marine metagenome; ENVO:00002010
1717
1631
-
Leu
CAG
[ENA]
¡û
>WENV181370436
OFQS01012286
[OFQS] freshwater metagenome; Freshwater Lake
389
303
-
Leu
CAG
[ENA]
¡û
>WENV181375417
OFQY01088582
[OFQY] wastewater metagenome; Exp Tend VB 10WW
363
277
-
Leu
CAG
[ENA]
¡û
>WENV181377353
OFRA01007450
[OFRA] wastewater metagenome; Lake Maggiore Verbania
410
496
+
Leu
CAG
[ENA]
¡û
>WENV181379694
OFRD01006148
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2636
2550
-
Leu
CAG
[ENA]
¡û
>WENV181383962
OFRH01002506
[OFRH] wastewater metagenome; Exp Tend NO 100WW
445
531
+
Leu
CAG
[ENA]
¡û
>WENV181385062
OFRI01029905
[OFRI] wastewater metagenome; Exp Tend VB 90WW
947
861
-
Leu
CAG
[ENA]
¡û
>WENV181386012
OFRL01000334
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
16485
16571
+
Leu
CAG
[ENA]
¡û
>WENV181399939
OFSF01000345
[OFSF] wastewater metagenome; Exp Tend VB 100WW
16336
16250
-
Leu
CAG
[ENA]
¡û
>WENV170574220
FLYM01014856
[FLYM] hot springs metagenome; Sediment
4451
4365
-
Leu
CAG
[ENA]
¡û
>WENV170709330
LNFM01000264
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9466
9380
-
Leu
CAG
[ENA]
¡û
>WENV170709574
LNFM01000483
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
37449
37535
+
Leu
CAG
[ENA]
¡û
>WENV170710872
LNFM01002886
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7038
7124
+
Leu
CAG
[ENA]
¡û
>WENV170711619
LNFM01006111
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6051
6137
+
Leu
CAG
[ENA]
¡û
>WENV170714090
LNFM01053527
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2373
2287
-
Leu
CAG
[ENA]
¡û
>WENV170983994
MWVV01139256
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
186
272
+
Leu
CAG
[ENA]
¡û
>C191154769
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
2997422
2997336
-
Leu
CAG
-
¡û
>C191163734
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
386448
386534
+
Leu
CAG
-
¡û
>W141801028
JPDP01000216
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
4405
4319
-
Leu
CAG
[ENA]
¡û
>W141805188
JPJC01000257
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
4396
4310
-
Leu
CAG
[ENA]
¡û
>SRA1003773
SRR002327.175252
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
141
+
Leu
CAG
[SRA]
>W1810463403
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
1545821
1545735
-
Leu
CAG
[ENA]
¡û
>W1810476718
QAOF01000005
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
241344
241430
+
Leu
CAG
[ENA]
¡û
>W1810476745
QAOG01000001
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
307137
307051
-
Leu
CAG
[ENA]
¡û
>W1810486915
QAYE01000009
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
3838
3752
-
Leu
CAG
[ENA]
¡û
>SRA1014139
SRR023845.15804
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
192
+
Leu
CAG
[SRA]
>SRA1014486
SRR023845.160412
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
39
-
Leu
CAG
[SRA]
>SRA1014546
SRR023845.192954
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
218
132
-
Leu
CAG
[SRA]
>SRA1014641
SRR023845.237651
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
213
+
Leu
CAG
[SRA]
>SRA1014740
SRR023845.291580
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
160
246
+
Leu
CAG
[SRA]
>SRA1014764
SRR023845.303921
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
184
98
-
Leu
CAG
[SRA]
>SRA1014792
SRR023845.316845
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
160
246
+
Leu
CAG
[SRA]
>SRA1014831
SRR023845.334077
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
26
112
+
Leu
CAG
[SRA]
>SRA1015476
SRR023846.78146
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
115
29
-
Leu
CAG
[SRA]
>SRA1015675
SRR023846.153843
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
123
209
+
Leu
CAG
[SRA]
>SRA1015956
SRR023846.283383
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
115
29
-
Leu
CAG
[SRA]
>SRA1016277
SRR023846.431719
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
146
+
Leu
CAG
[SRA]
>SRA1016292
SRR023846.437926
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
119
33
-
Leu
CAG
[SRA]
>SRA1016510
SRR023846.538241
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
48
134
+
Leu
CAG
[SRA]
>W2010302883
CABVLI010000029
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
43025
43111
+
Leu
CAG
[ENA]
¡û
>W2010311784
CABWMY010000005
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
219435
219521
+
Leu
CAG
[ENA]
¡û
>W2010311903
CABWNA010000003
Alphaproteobacteria
Sphingomonas sp. AX6 [CABWNA]
96894
96980
+
Leu
CAG
[ENA]
¡û
>W2010567712
JAATJI010000002
Alphaproteobacteria
Polymorphobacter fuscus DSM 105347 [JAATJI]
88608
88694
+
Leu
CAG
[ENA]
¡û
>W2010720883
JACIAP010000015
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
59293
59379
+
Leu
CAG
[ENA]
¡û
>W2010725303
JACIEA010000001
Alphaproteobacteria
Sphingorhabdus rigui DSM 29050 [JACIEA]
533445
533359
-
Leu
CAG
[ENA]
¡û
>W2011354896
RAPZ01000012
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
309399
309485
+
Leu
CAG
[ENA]
¡û
>W2011404469
RCWT01000011
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
496420
496506
+
Leu
CAG
[ENA]
¡û
>W2011404798
RCWY01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
494830
494744
-
Leu
CAG
[ENA]
¡û
>W2011407534
RCZC01000001
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
788088
788002
-
Leu
CAG
[ENA]
¡û
>W2011407745
RCZF01000002
Alphaproteobacteria
Sphingomonas koreensis S11.1Y [RCZF]
139352
139266
-
Leu
CAG
[ENA]
¡û
>W2011408127
RCZN01000013
Alphaproteobacteria
Sphingomonas koreensis S12 [RCZN]
66983
66897
-
Leu
CAG
[ENA]
¡û
>W2011493869
RWJI01000002
Alphaproteobacteria
Sphingorhabdus wooponensis 03SU3-P [RWJI]
124518
124432
-
Leu
CAG
[ENA]
¡û
>W2011495064
RWKS01000003
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
32898
32984
+
Leu
CAG
[ENA]
¡û
>W2011536275
SCIN01000004
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
18632
18546
-
Leu
CAG
[ENA]
¡û
>W2011538868
SCNH01000005
Alphaproteobacteria
Sphingomonas sp. 3F27F9 [SCNH]
114907
114821
-
Leu
CAG
[ENA]
¡û
>W2011553246
SDWJ01000002
Alphaproteobacteria
Sphingorhabdus profundilacus IMCC26285 [SDWJ]
1147309
1147223
-
Leu
CAG
[ENA]
¡û
>W2011578887
SGXR01000003
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
1338538
1338624
+
Leu
CAG
[ENA]
¡û
>W2011619370
SLUY01000003
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
467424
467338
-
Leu
CAG
[ENA]
¡û
>W2011623828
SLXW01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
668769
668855
+
Leu
CAG
[ENA]
¡û
>W2011624075
SLYA01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
361948
361862
-
Leu
CAG
[ENA]
¡û
>W2011624164
SLYD01000001
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
843909
843823
-
Leu
CAG
[ENA]
¡û
>W2011624281
SLYF01000006
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
174263
174177
-
Leu
CAG
[ENA]
¡û
>W2012106779
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
3127438
3127524
+
Leu
CAG
[ENA]
¡û
>W2012308130
WEFI01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WEFI]
485513
485427
-
Leu
CAG
[ENA]
¡û
>W2012337758
WIOL01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WIOL]
485513
485427
-
Leu
CAG
[ENA]
¡û
>W2110020689
BMDW01000016
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
2947
2861
-
Leu
CAG
[ENA]
¡û
>W2110051929
BNAQ01000002
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
704012
703926
-
Leu
CAG
[ENA]
¡û
>W2110243523
JACONT010000033
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
12580
12494
-
Leu
CAG
[ENA]
¡û
>W2110290223
JACYTY010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
59392
59478
+
Leu
CAG
[ENA]
¡û
>W2110290301
JACYTZ010000010
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
59571
59657
+
Leu
CAG
[ENA]
¡û
>W2110291028
JACYUS010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
375962
375876
-
Leu
CAG
[ENA]
¡û
>W2110291827
JACYVM010000009
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
95038
94952
-
Leu
CAG
[ENA]
¡û
>W2110554349
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
2221837
2221923
+
Leu
CAG
[ENA]
¡û
>W2110663349
JAHXZL010000010
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
114558
114472
-
Leu
CAG
[ENA]
¡û
>C231366146
CP096134
Alphaproteobacteria
Hyphomonadaceae bacterium JAD_PAG50586_4 [CP096134]
346830
346744
-
Leu
CAG
-
¡û
>C231536508
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
2603197
2603283
+
Leu
CAG
-
¡û
>C241006622
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
2607460
2607546
+
Leu
CAG
-
¡û
>C241115251
CP047045
Alphaproteobacteria
Terricaulis silvestris 0127_4 [CP047045]
316630
316544
-
Leu
CAG
-
¡û
>W1511357036
JRVI01000001
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
27105
27191
+
Leu
CAG
[ENA]
¡û
>W1511361475
JSBN01000008
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
15593
15679
+
Leu
CAG
[ENA]
¡û
>W121031743
AHHA01000008
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
10834
10748
-
Leu
CAG
[ENA]
¡û
>W121033245
AHIR01000026
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
76152
76238
+
Leu
CAG
[ENA]
¡û
>W121046792
AIDW01000006
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
172270
172356
+
Leu
CAG
[ENA]
¡û
>W1610732524
LMKH01000034
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
360565
360479
-
Leu
CAG
[ENA]
¡û
>W1610732736
LMKL01000009
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
31793
31707
-
Leu
CAG
[ENA]
¡û
>W1610732826
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
17518
17432
-
Leu
CAG
[ENA]
¡û
>W1610733112
LMKT01000028
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
69558
69472
-
Leu
CAG
[ENA]
¡û
>W1610733244
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
240348
240434
+
Leu
CAG
[ENA]
¡û
>W1610733302
LMKX01000010
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
142020
142106
+
Leu
CAG
[ENA]
¡û
>W1610733365
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
59658
59744
+
Leu
CAG
[ENA]
¡û
>W1610733547
LMLC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
652719
652805
+
Leu
CAG
[ENA]
¡û
>W1610733553
LMLD01000004
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
2160
2074
-
Leu
CAG
[ENA]
¡û
>W1610734646
LMLW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
681917
681831
-
Leu
CAG
[ENA]
¡û
>W1610739576
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
441566
441480
-
Leu
CAG
[ENA]
¡û
>W1610753375
LNEK01000037
Alphaproteobacteria
Alphaproteobacteria bacterium Ga0077535 [LNEK]
16156
16242
+
Leu
CAG
[ENA]
¡û
>W1610754374
LNFK01000048
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
562
648
+
Leu
CAG
[ENA]
¡û
>W1710571541
FOVZ01000006
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
92098
92012
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK