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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.709338 (18 seq.)
>W1712081432
NHOC01000019
Bacillota
Butyricicoccus porcorum BB10 [NHOC]
50332
50258
-
Glu
TTC
[ENA]
¡û
>WENV181099423
OECI01002759
[OECI] human metagenome; G_DNA_Stool
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV181108404
OEEJ01000018
[OEEJ] human metagenome; G_DNA_Tongue dorsum
60683
60754
+
Glu
TTC
[ENA]
¢þ
>WENV181900877
OGXW01000032
[OGXW] human gut metagenome; faeces
33446
33372
-
Glu
TTC
[ENA]
¢þ
>WENV181923522
OGYL01000743
[OGYL] human gut metagenome; faeces
24703
24777
+
Glu
TTC
[ENA]
¢þ
>WENV170002532
AGTN01059369
[AGTN] bioreactor metagenome; poplar biomass
187
258
+
Glu
TTC
[ENA]
¢þ
>C181171322
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
228309
228382
+
Glu
TTC
-
¡û
>C181171332
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
308376
308449
+
Glu
TTC
-
¡û
>C181171353
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
1534962
1535035
+
Glu
TTC
-
¡û
>C181171355
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3594249
3594175
-
Glu
TTC
-
¡û
>C181171361
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3454256
3454182
-
Glu
TTC
-
¡û
>C181171373
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3197612
3197538
-
Glu
TTC
-
¡û
>C181171405
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
2856988
2856915
-
Glu
TTC
-
¡û
>C181171424
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
2854200
2854127
-
Glu
TTC
-
¡û
>C181171426
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
86332
86258
-
Glu
TTC
-
¡û
>W1910229164
FNWG01000007
Bacillota
Angelakisella massiliensis Marseille-P3217 [FNWG]
516914
516840
-
Glu
TTC
[ENA]
¡û
>W1510061282
CCYH01000001
Bacillota
Candidatus Soleaferrea massiliensis massiliensis AP7 [CCYH]
1026
952
-
Glu
TTC
[ENA]
¡û
>W1710587230
FQXV01000017
Bacillota
Sporobacter termitidis DSM 10068 [FQXV]
7896
7825
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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