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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72568 (96 seq.)
>W131008832
AHXF01000050
Bacillota
Enterococcus faecium E1620 [AHXF]
97
183
+
Leu
CAA
[ENA]
¡û
>W131016703
AISL01000018
Bacillota
Enterococcus faecium 109 A1 [AISL]
4522
4608
+
Leu
CAA
[ENA]
¡û
>W131018196
AITT01000027
Bacillota
Enterococcus faecium HF50106 [AITT]
396232
396146
-
Leu
CAA
[ENA]
¡û
>W131018719
AIUF01000015
Bacillota
Enterococcus faecium UAA714 [AIUF]
4345
4431
+
Leu
CAA
[ENA]
¡û
>W131018863
AIUI01000021
Bacillota
Enterococcus faecium UAA718 [AIUI]
150315
150229
-
Leu
CAA
[ENA]
¡û
>W1710902190
LNLK01000126
Bacillota
Enterococcus faecium [LNLK]
1748
1834
+
Leu
CAA
[ENA]
¡û
>W1710905005
LNMV01000052
Bacillota
Enterococcus faecium [LNMV]
175
89
-
Leu
CAA
[ENA]
¡û
>W1710905097
LNMX01000061
Bacillota
Enterococcus faecium [LNMX]
175
89
-
Leu
CAA
[ENA]
¡û
>W1710907368
LNOT01000006
Bacillota
Enterococcus faecium [LNOT]
9764
9678
-
Leu
CAA
[ENA]
¡û
>W131027744
AJAP01000007
Bacillota
Enterococcus asini ATCC 700915 [AJAP]
3975
4061
+
Leu
CAA
[ENA]
¡û
>W131031619
AJDJ01000013
Bacillota
Enterococcus faecium UAA431 [AJDJ]
136806
136720
-
Leu
CAA
[ENA]
¡û
>W131032296
AJDV01000046
Bacillota
Enterococcus faecium EnGen0321 [AJDV]
19642
19556
-
Leu
CAA
[ENA]
¡û
>W1711024146
LRAV01000070
Bacillota
Enterococcus faecium [LRAV]
9749
9663
-
Leu
CAA
[ENA]
¡û
>W1711099225
LTKH01000018
Bacillota
Enterococcus sp. HMSC072G01 [LTKH]
19374
19288
-
Leu
CAA
[ENA]
¡û
>W1711108133
LTTK01000228
Bacillota
Enterococcus sp. HMSC076D08 [LTTK]
168
254
+
Leu
CAA
[ENA]
¡û
>W131200992
ASVU01000002
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
1939
2025
+
Leu
CAA
[ENA]
¡û
>W131209557
ATIW01000119
Bacillota
Enterococcus faecium OC2A-1 [ATIW]
54124
54038
-
Leu
CAA
[ENA]
¡û
>W1711694305
MSHY01000212
Bacillota
Enterococcus faecium [MSHY]
7335
7249
-
Leu
CAA
[ENA]
¡û
>W1712067268
NGKW01000001
Bacillota
Enterococcus faecium [NGKW]
145973
145887
-
Leu
CAA
[ENA]
¡û
>W1712067593
NGLB01000001
Bacillota
Enterococcus faecium [NGLB]
1824534
1824448
-
Leu
CAA
[ENA]
¡û
>W1712068302
NGLO01000001
Bacillota
Enterococcus faecium [NGLO]
1950028
1949942
-
Leu
CAA
[ENA]
¡û
>W1712069240
NGMF01000001
Bacillota
Enterococcus sp. 10F3_DIV0382 [NGMF]
2083878
2083792
-
Leu
CAA
[ENA]
¡û
>W1712097093
NIBO01000001
Bacillota
Enterococcus faecium [NIBO]
9663
9749
+
Leu
CAA
[ENA]
¡û
>C171102431
CP019988
Bacillota
Enterococcus faecium [CP019988]
1584442
1584356
-
Leu
CAA
-
¡û
>WENV181808195
OGSR01000102
[OGSR] human gut metagenome; fecal sample 8 from infant 2
38255
38169
-
Leu
CAA
[ENA]
¢þ
>WENV182862916
OKPQ01000052
[OKPQ] human gut metagenome; human gut
23767
23853
+
Leu
CAA
[ENA]
¢þ
>C181090469
CP023789
Bacillota
Enterococcus faecium Efaecium_ER04462.3A [CP023789]
1018162
1018248
+
Leu
CAA
-
¡û
>C181122358
CP025754
Bacillota
Enterococcus faecium AALTL [CP025754]
83738
83652
-
Leu
CAA
-
¡û
>C181155002
CP027517
Bacillota
Enterococcus faecium AUSMDU00004024 [CP027517]
999128
999214
+
Leu
CAA
-
¡û
>C191195736
LR134095
Bacillota
Enterococcus faecium [LR134095]
1687121
1687035
-
Leu
CAA
-
¡û
>C191215206
LR135185
Bacillota
Enterococcus faecium [LR135185]
1685939
1685853
-
Leu
CAA
-
¡û
>C191216197
LR135317
Bacillota
Enterococcus faecium [LR135317]
997776
997862
+
Leu
CAA
-
¡û
>C191216964
LR135401
Bacillota
Enterococcus faecium [LR135401]
973715
973801
+
Leu
CAA
-
¡û
>C191217441
LR135482
Bacillota
Enterococcus faecium [LR135482]
934942
935028
+
Leu
CAA
-
¡û
>W1910180872
BJLL01000039
Bacillota
Enterococcus sp. NBRC 3427 [BJLL]
15
101
+
Leu
CAA
[ENA]
¡û
>W1910284327
FREM01000029
Bacillota
Enterococcus faecium [FREM]
19019
18933
-
Leu
CAA
[ENA]
¡û
>W1910311969
FRXP01000031
Bacillota
Enterococcus faecium [FRXP]
1476
1562
+
Leu
CAA
[ENA]
¡û
>W1910312493
FRXW01000049
Bacillota
Enterococcus faecium [FRXW]
19545
19459
-
Leu
CAA
[ENA]
¡û
>W1910312571
FRXX01000042
Bacillota
Enterococcus faecium [FRXX]
9847
9761
-
Leu
CAA
[ENA]
¡û
>W1910312761
FRYA01000050
Bacillota
Enterococcus faecium [FRYA]
9847
9761
-
Leu
CAA
[ENA]
¡û
>W1910474456
FXFU01000125
Bacillota
Enterococcus faecium VREN2299 [FXFU]
220
134
-
Leu
CAA
[ENA]
¡û
>W1910474700
FXFY01000114
Bacillota
Enterococcus faecium VREN2300 [FXFY]
211
125
-
Leu
CAA
[ENA]
¡û
>W1910475760
FXGP01000143
Bacillota
Enterococcus faecium VREN1531 [FXGP]
227
141
-
Leu
CAA
[ENA]
¡û
>W1910476131
FXGV01000155
Bacillota
Enterococcus faecium VREN1375 [FXGV]
1209
1295
+
Leu
CAA
[ENA]
¡û
>W1910477594
FXHT01000137
Bacillota
Enterococcus faecium VREN1455 [FXHT]
1329
1415
+
Leu
CAA
[ENA]
¡û
>W1910477968
FXHZ01000134
Bacillota
Enterococcus faecium VREN1742 [FXHZ]
214
128
-
Leu
CAA
[ENA]
¡û
>W1910479067
FXIR01000138
Bacillota
Enterococcus faecium VREN1776 [FXIR]
218
132
-
Leu
CAA
[ENA]
¡û
>W1910479678
FXJB01000147
Bacillota
Enterococcus faecium VREN1811 [FXJB]
1341
1427
+
Leu
CAA
[ENA]
¡û
>W1910480169
FXJJ01000149
Bacillota
Enterococcus faecium VREN1808 [FXJJ]
1333
1419
+
Leu
CAA
[ENA]
¡û
>W1910480551
FXJP01000114
Bacillota
Enterococcus faecium VREN3649 [FXJP]
1651
1737
+
Leu
CAA
[ENA]
¡û
>W1910481042
FXJX01000117
Bacillota
Enterococcus faecium VREN3686 [FXJX]
1470
1556
+
Leu
CAA
[ENA]
¡û
>W1910481347
FXKC01000120
Bacillota
Enterococcus faecium VREN3647 [FXKC]
236
150
-
Leu
CAA
[ENA]
¡û
>W1910483030
FXLD01000109
Bacillota
Enterococcus faecium VREN3638 [FXLD]
1652
1738
+
Leu
CAA
[ENA]
¡û
>W1910607918
LEQP01000001
Bacillota
Enterococcus faecium 176EA1 [LEQP]
1287973
1287887
-
Leu
CAA
[ENA]
¡û
>W1910608171
LEQT01000005
Bacillota
Enterococcus faecium 235EA1 [LEQT]
210794
210708
-
Leu
CAA
[ENA]
¡û
>W1910608328
LEQW01000004
Bacillota
Enterococcus faecium 261EA1 [LEQW]
144427
144341
-
Leu
CAA
[ENA]
¡û
>W1910608577
LERB01000010
Bacillota
Enterococcus faecium 283EA1 [LERB]
19357
19271
-
Leu
CAA
[ENA]
¡û
>W1910608821
LERF01000018
Bacillota
Enterococcus faecium 300BEA1 [LERF]
175
261
+
Leu
CAA
[ENA]
¡û
>W1910609303
LERP01000007
Bacillota
Enterococcus faecium 67EA1 [LERP]
1319179
1319093
-
Leu
CAA
[ENA]
¡û
>W1910609466
LERS01000004
Bacillota
Enterococcus faecium 78EA1 [LERS]
472174
472088
-
Leu
CAA
[ENA]
¡û
>W1910998101
NLCQ01000056
Bacillota
Enterococcus faecium VRE2014-195 [NLCQ]
903
989
+
Leu
CAA
[ENA]
¡û
>W1911536234
OMMA01000043
Bacillota
Enterococcus faecium [OMMA]
19407
19321
-
Leu
CAA
[ENA]
¡û
>W1911536961
OMMN01000081
Bacillota
Enterococcus faecium [OMMN]
992
1078
+
Leu
CAA
[ENA]
¡û
>W1911537645
OMNA01000042
Bacillota
Enterococcus faecium [OMNA]
19407
19321
-
Leu
CAA
[ENA]
¡û
>W1911537768
OMNC01000042
Bacillota
Enterococcus faecium [OMNC]
19462
19376
-
Leu
CAA
[ENA]
¡û
>W1911588611
PJVS01000063
Bacillota
Enterococcus faecium EN47 [PJVS]
9758
9672
-
Leu
CAA
[ENA]
¡û
>W1911703310
QOJC01000120
Bacillota
Enterococcus faecium IHC130 [QOJC]
1565
1651
+
Leu
CAA
[ENA]
¡û
>W1911704650
QOJY01000339
Bacillota
Enterococcus faecium IHC17 [QOJY]
19418
19332
-
Leu
CAA
[ENA]
¡û
>W1911711553
QPSF01000044
Bacillota
Enterococcus faecium ARL08-1249 [QPSF]
19531
19445
-
Leu
CAA
[ENA]
¡û
>W1810062023
PDNS01000211
Bacillota
Enterococcus faecium 76 [PDNS]
1479
1565
+
Leu
CAA
[ENA]
¡û
>W1810312837
PTVN01000083
Bacillota
Enterococcus faecium CVM N59891F [PTVN]
7357
7271
-
Leu
CAA
[ENA]
¡û
>W1810318458
PTZR01000126
Bacillota
Enterococcus faecium CVM N54546 [PTZR]
1286
1372
+
Leu
CAA
[ENA]
¡û
>W1810500158
QBIC01000096
Bacillota
Enterococcus faecium SAU28 [QBIC]
19587
19501
-
Leu
CAA
[ENA]
¡û
>W1810623852
QHGT01000139
Bacillota
Enterococcus faecium 19 [QHGT]
2085
1999
-
Leu
CAA
[ENA]
¡û
>W1810697724
QLYL01000001
Bacillota
Enterococcus faecium A22 [QLYL]
1618331
1618245
-
Leu
CAA
[ENA]
¡û
>W1810697812
QLYN01000001
Bacillota
Enterococcus faecium A16 [QLYN]
150461
150547
+
Leu
CAA
[ENA]
¡û
>W1810813861
QRZW01000003
Bacillota
Enterococcus asini AF13-3-H [QRZW]
1327
1413
+
Leu
CAA
[ENA]
¡û
>W10124569
AEBG01000198
Bacillota
Enterococcus faecium TX0133C [AEBG]
1338
1252
-
Leu
CAA
[ENA]
¡û
>W1511356450
JRUG01000049
Bacillota
Enterococcus faecium 70-36-8 [JRUG]
167604
167518
-
Leu
CAA
[ENA]
¡û
>W1511430365
JUEL01000065
Bacillota
Enterococcus faecium 1970/8/2 [JUEL]
66152
66066
-
Leu
CAA
[ENA]
¡û
>W1511445704
JUVY01000230
Bacillota
Enterococcus faecium 715_EFCM [JUVY]
78
164
+
Leu
CAA
[ENA]
¡û
>W1511471051
JVXN01000146
Bacillota
Enterococcus faecium 1238_EFCM [JVXN]
75
161
+
Leu
CAA
[ENA]
¡û
>W1511471811
JVYL01000124
Bacillota
Enterococcus faecium 1216.rep1_EFCM [JVYL]
19464
19378
-
Leu
CAA
[ENA]
¡û
>W11131456
AEBG01000198
Bacillota
Enterococcus faecium TX0133C [AEBG]
1338
1252
-
Leu
CAA
[ENA]
¡û
>W1511592622
LBIN01000005
Bacillota
Enterococcus faecium MRSN 11639 [LBIN]
19499
19413
-
Leu
CAA
[ENA]
¡û
>W1511637841
LDNI01000005
Bacillota
Enterococcus faecium KACC16097 [LDNI]
401
487
+
Leu
CAA
[ENA]
¡û
>W1511637973
LDNK01000056
Bacillota
Enterococcus faecium KACC16106 [LDNK]
14806
14720
-
Leu
CAA
[ENA]
¡û
>C121011650
CP003351
Bacillota
Enterococcus faecium Aus0004 [CP003351]
1318900
1318814
-
Leu
CAA
[Ensembl]
¡û
>W121122162
AMBB01000035
Bacillota
Enterococcus faecium C621 [AMBB]
19430
19344
-
Leu
CAA
[ENA]
¡û
>W1610462056
FKLM01000047
Bacillota
Enterococcus faecium [FKLM]
19699
19613
-
Leu
CAA
[ENA]
¡û
>W1610761445
LNLK01000126
Bacillota
Enterococcus faecium [LNLK]
1748
1834
+
Leu
CAA
[ENA]
¡û
>W1610764260
LNMV01000052
Bacillota
Enterococcus faecium [LNMV]
175
89
-
Leu
CAA
[ENA]
¡û
>W1610764352
LNMX01000061
Bacillota
Enterococcus faecium [LNMX]
175
89
-
Leu
CAA
[ENA]
¡û
>W1610766382
LNOT01000006
Bacillota
Enterococcus faecium [LNOT]
9764
9678
-
Leu
CAA
[ENA]
¡û
>W1610872258
LRAV01000070
Bacillota
Enterococcus faecium [LRAV]
9749
9663
-
Leu
CAA
[ENA]
¡û
>W1710461271
FKLM01000047
Bacillota
Enterococcus faecium [FKLM]
19699
19613
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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