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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72707 (25 seq.)
>W1711772016
MVGR01000003
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
216358
216273
-
Leu
TAA
[ENA]
¡û
>C171016634
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2431919
2432004
+
Leu
TAA
-
¡û
>W141242426
CAII01000659
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
6930
7015
+
Leu
TAA
[ENA]
¡û
>W141242458
CAIJ01000414
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
7030
6945
-
Leu
TAA
[ENA]
¡û
>W141242585
CAIM01000680
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1205
1290
+
Leu
TAA
[ENA]
¡û
>W141242630
CAIO01000070
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
23421
23336
-
Leu
TAA
[ENA]
¡û
>W141242699
CAIP01000424
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
10130
10215
+
Leu
TAA
[ENA]
¡û
>W141242728
CAIQ01000277
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
6261
6349
+
Leu
TAA
[ENA]
¡û
>C08006366
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4628718
4628633
-
Leu
TAA
[Ensembl]
¡û
>WENV182866000
OKRQ01010572
[OKRQ] freshwater metagenome; freshwater
679
594
-
Leu
TAA
[ENA]
¢þ
>WENV170680816
LFEF01024121
[LFEF] freshwater metagenome; waterbloom
34968
34883
-
Leu
TAA
[ENA]
¢þ
>C181046165
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2198660
2198745
+
Leu
TAA
-
¡û
>C191007278
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2519603
2519518
-
Leu
TAA
-
¡û
>W1910020354
BDSG01000052
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
2839
2754
-
Leu
TAA
[ENA]
¡û
>W1910020388
BDSM01000013
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
150760
150675
-
Leu
TAA
[ENA]
¡û
>W1910038716
BEIV01000123
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
7654
7569
-
Leu
TAA
[ENA]
¡û
>W1910067416
BFAC01000020
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
45599
45514
-
Leu
TAA
[ENA]
¡û
>W1910142339
BIFY01000071
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
18419
18504
+
Leu
TAA
[ENA]
¡û
>W1910768672
MOLZ01000072
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
6734
6819
+
Leu
TAA
[ENA]
¡û
>C151079365
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2435146
2435231
+
Leu
TAA
[Ensembl]
¡û
>C151080708
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
5127579
5127494
-
Leu
TAA
-
¡û
>W1510013630
BBPA01000051
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
115658
115573
-
Leu
TAA
[ENA]
¡û
>W1610550827
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
122007
122092
+
Leu
TAA
[ENA]
¡û
>W1710004746
AJHB01001519
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
2842
2757
-
Leu
TAA
[ENA]
¡û
>W1710660704
JXYX01000007
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
122007
122092
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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