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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
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Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72985 (135 seq.)
>W1710809817
LKEV01000006
Actinomycetota
Corynebacterium lowii [LKEV]
90940
91028
+
Leu
GAG
[ENA]
¡û
>W1710821319
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
736199
736111
-
Leu
GAG
[ENA]
¡û
>W1711082144
LSTQ01000022
Actinomycetota
Corynebacterium stationis [LSTQ]
95601
95513
-
Leu
GAG
[ENA]
¡û
>W1711095173
LTGO01000043
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
7744
7658
-
Leu
GAG
[ENA]
¡û
>W1711096606
LTHX01000046
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
88047
88133
+
Leu
GAG
[ENA]
¡û
>W1711102636
LTNW01000063
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
84064
84152
+
Leu
GAG
[ENA]
¡û
>W1711103666
LTOW01000116
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
88479
88565
+
Leu
GAG
[ENA]
¡û
>W1711105915
LTRH01000029
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
88671
88757
+
Leu
GAG
[ENA]
¡û
>W1711106548
LTRY01000031
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
19500
19586
+
Leu
GAG
[ENA]
¡û
>W1711106666
LTSB01000051
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
3726
3812
+
Leu
GAG
[ENA]
¡û
>W1711107195
LTSO01000025
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
131804
131718
-
Leu
GAG
[ENA]
¡û
>W1711114748
LTZO01000055
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
164460
164374
-
Leu
GAG
[ENA]
¡û
>W1711185889
LWNT01000078
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
88542
88628
+
Leu
GAG
[ENA]
¡û
>W1711185899
LWNU01000005
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
110444
110356
-
Leu
GAG
[ENA]
¡û
>W1711186524
LWOH01000026
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
85657
85745
+
Leu
GAG
[ENA]
¡û
>W1711186794
LWOM01000076
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
129411
129325
-
Leu
GAG
[ENA]
¡û
>W1711186921
LWOP01000045
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
96401
96313
-
Leu
GAG
[ENA]
¡û
>W1711186964
LWOR01000018
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
100861
100773
-
Leu
GAG
[ENA]
¡û
>W1711187674
LWPR01000016
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
58915
58827
-
Leu
GAG
[ENA]
¡û
>W1711208380
LXGG01000001
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
56647
56733
+
Leu
GAG
[ENA]
¡û
>W1711510252
MLAL01000016
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
366638
366552
-
Leu
GAG
[ENA]
¡û
>W1711511685
MLCQ01000017
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
74809
74895
+
Leu
GAG
[ENA]
¡û
>W1711511721
MLCR01000005
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
397274
397186
-
Leu
GAG
[ENA]
¡û
>C171001826
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
1474080
1474168
+
Leu
GAG
-
¡û
>C171001999
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
1295984
1295896
-
Leu
GAG
-
¡û
>C171002132
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
1412829
1412917
+
Leu
GAG
-
¡û
>C171064748
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1128635
1128547
-
Leu
GAG
-
¡û
>C171098509
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1560673
1560761
+
Leu
GAG
-
¡û
>C171101838
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
1273886
1273974
+
Leu
GAG
-
¡û
>W131159309
AQUY01000001
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
1025857
1025769
-
Leu
GAG
[ENA]
¡û
>W131160873
AQXB01000006
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
131783
131697
-
Leu
GAG
[ENA]
¡û
>W131164487
ARAV01000001
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
90335
90423
+
Leu
GAG
[ENA]
¡û
>W131165328
ARBM01000001
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
78602
78690
+
Leu
GAG
[ENA]
¡û
>W131215685
ATVF01000004
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
104986
105072
+
Leu
GAG
[ENA]
¡û
>W131215686
ATVF01000004
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
105170
105258
+
Leu
GAG
[ENA]
¡û
>W131215724
ATVG01000001
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
54474
54562
+
Leu
GAG
[ENA]
¡û
>W131219805
ATYV01000030
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
8708
8796
+
Leu
GAG
[ENA]
¡û
>W131251658
CAVS020000026
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
98096
98008
-
Leu
GAG
[ENA]
¡û
>W141008905
AHAE01000032
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
95905
95993
+
Leu
GAG
[ENA]
¡û
>WENV180711563
ODFP01001964
[ODFP] human metagenome; G_DNA_Anterior nares
247
161
-
Leu
GAG
[ENA]
¢þ
>WENV180711697
ODFQ01001615
[ODFQ] human metagenome; G_DNA_Anterior nares
608
694
+
Leu
GAG
[ENA]
¢þ
>WENV180766218
ODIE01000039
[ODIE] human metagenome; G_DNA_Anterior nares
21425
21339
-
Leu
GAG
[ENA]
¢þ
>WENV180836551
ODKF01000788
[ODKF] human metagenome; G_DNA_Anterior nares
805
891
+
Leu
GAG
[ENA]
¢þ
>WENV180844750
ODKO01002018
[ODKO] human metagenome; G_DNA_Anterior nares
34
120
+
Leu
GAG
[ENA]
¢þ
>WENV180878882
ODLY01000940
[ODLY] human metagenome; G_DNA_Anterior nares
1021
935
-
Leu
GAG
[ENA]
¢þ
>WENV180913526
ODSU01011531
[ODSU] human metagenome; G_DNA_Anterior nares
197
283
+
Leu
GAG
[ENA]
¢þ
>WENV180914940
ODTA01002984
[ODTA] human metagenome; G_DNA_Anterior nares
95
181
+
Leu
GAG
[ENA]
¢þ
>WENV180916311
ODTC01002746
[ODTC] human metagenome; G_DNA_Anterior nares
505
591
+
Leu
GAG
[ENA]
¢þ
>WENV180917923
ODTE01007729
[ODTE] human metagenome; G_DNA_Anterior nares
360
274
-
Leu
GAG
[ENA]
¢þ
>WENV180918047
ODTF01000037
[ODTF] human metagenome; G_DNA_Anterior nares
31669
31755
+
Leu
GAG
[ENA]
¢þ
>WENV180966729
ODUR01001434
[ODUR] human metagenome; G_DNA_Anterior nares
522
436
-
Leu
GAG
[ENA]
¢þ
>WENV180972520
ODUV01005143
[ODUV] human metagenome; G_DNA_Anterior nares
213
127
-
Leu
GAG
[ENA]
¢þ
>WENV180984687
ODVI01001552
[ODVI] human metagenome; G_DNA_Anterior nares
324
238
-
Leu
GAG
[ENA]
¢þ
>WENV180989559
ODVM01002084
[ODVM] human metagenome; G_DNA_Anterior nares
732
818
+
Leu
GAG
[ENA]
¢þ
>WENV181000383
ODVU01022729
[ODVU] human metagenome; G_DNA_Anterior nares
134
48
-
Leu
GAG
[ENA]
¢þ
>WENV181010045
ODWG01000084
[ODWG] human metagenome; G_DNA_Anterior nares
11800
11714
-
Leu
GAG
[ENA]
¢þ
>WENV181010056
ODWG01000180
[ODWG] human metagenome; G_DNA_Anterior nares
1100
1186
+
Leu
GAG
[ENA]
¢þ
>WENV181012973
ODWL01002703
[ODWL] human metagenome; G_DNA_Anterior nares
357
443
+
Leu
GAG
[ENA]
¢þ
>WENV181040313
ODXR01000004
[ODXR] human metagenome; G_DNA_Anterior nares
58269
58355
+
Leu
GAG
[ENA]
¢þ
>WENV181119586
OEFI01000591
[OEFI] human metagenome; G_DNA_Anterior nares
1055
969
-
Leu
GAG
[ENA]
¢þ
>WENV181131396
OEGC01000025
[OEGC] human metagenome; G_DNA_Anterior nares
28437
28351
-
Leu
GAG
[ENA]
¢þ
>W141154883
AXLN01000007
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
149732
149646
-
Leu
GAG
[ENA]
¡û
>W141154917
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
97880
97966
+
Leu
GAG
[ENA]
¡û
>W141154977
AXLP01000003
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
99955
100041
+
Leu
GAG
[ENA]
¡û
>W141155103
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
94608
94694
+
Leu
GAG
[ENA]
¡û
>W141155196
AXLU01000001
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
88566
88652
+
Leu
GAG
[ENA]
¡û
>W141155364
AXLX01000007
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
201620
201534
-
Leu
GAG
[ENA]
¡û
>W141155422
AXLY01000006
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
14958
15044
+
Leu
GAG
[ENA]
¡û
>W141155538
AXMA01000008
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
453992
453906
-
Leu
GAG
[ENA]
¡û
>W141155617
AXMC01000004
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
199829
199743
-
Leu
GAG
[ENA]
¡û
>W141243958
CAJZ01000114
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
40946
40858
-
Leu
GAG
[ENA]
¡û
>WENV182629126
OJKR01007160
[OJKR] metagenome; surface
921
835
-
Leu
GAG
[ENA]
¢þ
>WENV182635922
OJKZ01000021
[OJKZ] metagenome; surface
110508
110422
-
Leu
GAG
[ENA]
¢þ
>WENV182635923
OJKZ01000022
[OJKZ] metagenome; surface
91681
91767
+
Leu
GAG
[ENA]
¢þ
>WENV182643365
OJLU01004469
[OJLU] metagenome; surface
824
738
-
Leu
GAG
[ENA]
¢þ
>WENV182643515
OJLW01000002
[OJLW] metagenome; surface
113817
113731
-
Leu
GAG
[ENA]
¢þ
>WENV182644044
OJLW01006080
[OJLW] metagenome; surface
1487
1573
+
Leu
GAG
[ENA]
¢þ
>WENV182644568
OJLY01000011
[OJLY] metagenome; surface
112977
113063
+
Leu
GAG
[ENA]
¢þ
>WENV182644572
OJLY01000012
[OJLY] metagenome; surface
129226
129140
-
Leu
GAG
[ENA]
¢þ
>WENV182645665
OJLZ01000461
[OJLZ] metagenome; surface
3239
3153
-
Leu
GAG
[ENA]
¢þ
>WENV182671526
OJNM01000103
[OJNM] metagenome; surface
30060
30146
+
Leu
GAG
[ENA]
¢þ
>WENV182671647
OJNM01000825
[OJNM] metagenome; surface
2050
1964
-
Leu
GAG
[ENA]
¢þ
>WENV170720717
LSQX01163547
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9831
9743
-
Leu
GAG
[ENA]
¢þ
>WENV170726869
LSQX01396775
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11165
11079
-
Leu
GAG
[ENA]
¢þ
>C181001607
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1749809
1749895
+
Leu
GAG
-
¡û
>C181001608
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1750002
1750088
+
Leu
GAG
-
¡û
>C181143850
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
1203042
1202956
-
Leu
GAG
-
¡û
>C181211263
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
1546227
1546313
+
Leu
GAG
-
¡û
>C181215121
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
2014804
2014890
+
Leu
GAG
-
¡û
>C191210949
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1259867
1259953
+
Leu
GAG
-
¡û
>W141563931
JIAJ01000001
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
530488
530400
-
Leu
GAG
[ENA]
¡û
>W09122420
ACGD01000045
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
105186
105100
-
Leu
GAG
[ENA]
¡û
>W1910225873
FMSX01000022
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
390398
390312
-
Leu
GAG
[ENA]
¡û
>C141002605
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
1490138
1490226
+
Leu
GAG
[Ensembl]
¡û
>W1910438323
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
236873
236787
-
Leu
GAG
[ENA]
¡û
>W1910442340
FWFE01000008
Actinomycetota
Corynebacterium casei JB4 [FWFE]
140933
141019
+
Leu
GAG
[ENA]
¡û
>W1910469853
FWYQ01000048
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
84973
85059
+
Leu
GAG
[ENA]
¡û
>W1911596544
PNHG01000002
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
54345
54259
-
Leu
GAG
[ENA]
¡û
>W1810058139
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
1909033
1908947
-
Leu
GAG
[ENA]
¡û
>W1810155019
PJAF01000001
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
126863
126777
-
Leu
GAG
[ENA]
¡û
>W1810187350
PKHN01000003
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
96547
96633
+
Leu
GAG
[ENA]
¡û
>W1810187458
PKHP01000005
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
118589
118503
-
Leu
GAG
[ENA]
¡û
>W1810187495
PKHQ01000002
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
240091
240005
-
Leu
GAG
[ENA]
¡û
>W1810326738
PUGE01000007
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
59440
59526
+
Leu
GAG
[ENA]
¡û
>W1810568939
QEEZ01000004
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
68001
67915
-
Leu
GAG
[ENA]
¡û
>C151005930
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
1580425
1580511
+
Leu
GAG
[Ensembl]
¡û
>C151007290
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
1374456
1374370
-
Leu
GAG
[Ensembl]
¡û
>C151040829
CP008944
Actinomycetota
Corynebacterium atypicum R2070 [CP008944]
1101982
1101894
-
Leu
GAG
[Ensembl]
¡û
>C151079705
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
1289248
1289336
+
Leu
GAG
[Ensembl]
¡û
>W10116346
ADNS01000002
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
138299
138387
+
Leu
GAG
[ENA]
¡û
>W10127203
AEED01000106
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
9856
9942
+
Leu
GAG
[ENA]
¡û
>W1511351440
JRNG01000013
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
34117
34205
+
Leu
GAG
[ENA]
¡û
>W1511356274
JRUB01000001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
311979
312067
+
Leu
GAG
[ENA]
¡û
>W11121015
ADNS01000002
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
138299
138387
+
Leu
GAG
[ENA]
¡û
>W11134691
AEED01000106
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
9856
9942
+
Leu
GAG
[ENA]
¡û
>W1511595735
LBNF01000001
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
54710
54622
-
Leu
GAG
[ENA]
¡û
>W1511644901
LDYE01000011
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
275437
275351
-
Leu
GAG
[ENA]
¡û
>C161041070
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
693648
693560
-
Leu
GAG
[Ensembl]
¡û
>C161070420
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
1451209
1451297
+
Leu
GAG
[Ensembl]
¡û
>C161089875
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1570989
1571075
+
Leu
GAG
[Ensembl]
¡û
>C161089876
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1571164
1571250
+
Leu
GAG
[Ensembl]
¡û
>W121127421
CAFW01000100
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
138156
138242
+
Leu
GAG
[ENA]
¡û
>W1610069807
BCSU01000006
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
158
72
-
Leu
GAG
[ENA]
¡û
>C131005389
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1620277
1620365
+
Leu
GAG
[Ensembl]
¡û
>C131013476
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1502350
1502436
+
Leu
GAG
[Ensembl]
¡û
>C131013477
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1502534
1502622
+
Leu
GAG
[Ensembl]
¡û
>W1610673872
LKEV01000006
Actinomycetota
Corynebacterium lowii [LKEV]
90940
91028
+
Leu
GAG
[ENA]
¡û
>W1610685281
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
736199
736111
-
Leu
GAG
[ENA]
¡û
>W1610920929
LSTQ01000022
Actinomycetota
Corynebacterium stationis [LSTQ]
95601
95513
-
Leu
GAG
[ENA]
¡û
>W1610996142
LXGG01000001
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
56647
56733
+
Leu
GAG
[ENA]
¡û
>W1710067180
BCSU01000006
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
158
72
-
Leu
GAG
[ENA]
¡û
>W1710534338
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
2383968
2384054
+
Leu
GAG
[ENA]
¡û
>W1710563031
FOPJ01000006
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
99860
99948
+
Leu
GAG
[ENA]
¡û
>W1710595968
FTMH01000001
Actinomycetota
Corynebacterium afermentans [FTMH]
56705
56791
+
Leu
GAG
[ENA]
¡û
>W1710608173
FXAR01000006
Actinomycetota
Corynebacterium pollutisoli [FXAR]
104589
104677
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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