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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.732407 (108 seq.)
>W131169853
ARFB01000009
Bacteroidota
Segetibacter koreensis DSM 18137 [ARFB]
162095
162023
-
Thr
GGT
[ENA]
¡û
>WENV180327722
OBKT01423046
[OBKT] soil metagenome; soil
42
114
+
Thr
GGT
[ENA]
¡û
>WENV181308243
OFIS01001443
[OFIS] sludge metagenome; sludge
2316
2244
-
Thr
GGT
[ENA]
¡û
>WENV181402288
OFTY01000446
[OFTY] sludge metagenome; sludge
3123
3051
-
Thr
GGT
[ENA]
¡û
>WENV183092926
OLLO01000351
[OLLO] soil metagenome; soil
53
125
+
Thr
GGT
[ENA]
¡û
>WENV183742375
PJUH01018018
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
370
296
-
Thr
GGT
[ENA]
¡û
>WENV183742910
PJUI01009371
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
394
320
-
Thr
GGT
[ENA]
¡û
>WENV170981601
MWVT01143586
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
99
25
-
Thr
GGT
[ENA]
¡û
>WENV170981648
MWVT01159178
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
401
327
-
Thr
GGT
[ENA]
¡û
>WENV170981653
MWVT01160937
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
105
177
+
Thr
GGT
[ENA]
¡û
>WENV170982508
MWVU01123924
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
28
100
+
Thr
GGT
[ENA]
¡û
>WENV170982920
MWVV01001015
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
8419
8493
+
Thr
GGT
[ENA]
¡û
>WENV170983237
MWVV01014500
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
578
652
+
Thr
GGT
[ENA]
¡û
>WENV170983569
MWVV01054115
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
75
149
+
Thr
GGT
[ENA]
¡û
>WENV170984838
MWVW01000585
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
7674
7748
+
Thr
GGT
[ENA]
¡û
>WENV170984854
MWVW01000751
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
6381
6307
-
Thr
GGT
[ENA]
¡û
>WENV170985239
MWVW01047746
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
149
221
+
Thr
GGT
[ENA]
¡û
>WENV170985393
MWVW01087993
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
215
141
-
Thr
GGT
[ENA]
¡û
>WENV170985522
MWVW01135725
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
137
211
+
Thr
GGT
[ENA]
¡û
>WENV170985896
MWVX01006256
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
3535
3607
+
Thr
GGT
[ENA]
¡û
>WENV170986407
MWVX01037058
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
125
199
+
Thr
GGT
[ENA]
¡û
>WENV170986408
MWVX01037058
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1320
1246
-
Thr
GGT
[ENA]
¡û
>WENV170988270
MWVX01431329
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
288
214
-
Thr
GGT
[ENA]
¡û
>WENV170988504
MWVX01518051
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
81
7
-
Thr
GGT
[ENA]
¡û
>WENV170988511
MWVX01520169
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
135
63
-
Thr
GGT
[ENA]
¡û
>WENV170989232
MWVZ01005296
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
1722
1650
-
Thr
GGT
[ENA]
¡û
>WENV170990042
MWVZ01191167
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
88
162
+
Thr
GGT
[ENA]
¡û
>WENV170990060
MWVZ01196455
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
309
235
-
Thr
GGT
[ENA]
¡û
>WENV170990249
MWWA01000075
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
6216
6144
-
Thr
GGT
[ENA]
¡û
>WENV170991683
MWWA01284790
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
335
409
+
Thr
GGT
[ENA]
¡û
>WENV170992091
MWWB01001016
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
3449
3523
+
Thr
GGT
[ENA]
¡û
>WENV170992502
MWWB01036367
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
944
1018
+
Thr
GGT
[ENA]
¡û
>WENV170992826
MWWB01103615
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
539
611
+
Thr
GGT
[ENA]
¡û
>WENV170992970
MWWB01143366
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
387
461
+
Thr
GGT
[ENA]
¡û
>WENV170992998
MWWB01151202
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
318
244
-
Thr
GGT
[ENA]
¡û
>WENV170993242
MWWB01230001
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
86
160
+
Thr
GGT
[ENA]
¡û
>WENV170993284
MWWB01248166
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
332
258
-
Thr
GGT
[ENA]
¡û
>WENV170994480
MWWE01000807
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1662
1588
-
Thr
GGT
[ENA]
¡û
>WENV170995296
MWWF01000199
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
6944
6870
-
Thr
GGT
[ENA]
¡û
>WENV170995341
MWWF01001361
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
5064
4990
-
Thr
GGT
[ENA]
¡û
>WENV170995452
MWWF01009545
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
591
663
+
Thr
GGT
[ENA]
¡û
>WENV170995851
MWWF01074735
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
228
156
-
Thr
GGT
[ENA]
¡û
>WENV170996233
MWWF01183624
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
250
324
+
Thr
GGT
[ENA]
¡û
>WENV170996626
MWWF01351514
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
32
104
+
Thr
GGT
[ENA]
¡û
>WENV170997298
MWWG01078042
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
239
165
-
Thr
GGT
[ENA]
¡û
>WENV170997608
MWWG01208965
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
364
292
-
Thr
GGT
[ENA]
¡û
>WENV170998992
MWWJ01195992
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
382
308
-
Thr
GGT
[ENA]
¡û
>WENV170999006
MWWJ01199979
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
70
144
+
Thr
GGT
[ENA]
¡û
>WENV170999322
MWWK01024757
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
471
545
+
Thr
GGT
[ENA]
¡û
>WENV170999675
MWWK01142555
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
196
268
+
Thr
GGT
[ENA]
¡û
>W09108605
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
2313562
2313488
-
Thr
GGT
[ENA]
¡û
>C191090811
CP032489
Bacteroidota
Arachidicoccus soli KIS59-12 [CP032489]
742619
742547
-
Thr
GGT
-
¡û
>W1910805082
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
47356
47284
-
Thr
GGT
[ENA]
¡û
>W1911775063
QXMH01000002
Bacteroidota
Chitinophaga sp. T22 [QXMH]
372923
372995
+
Thr
GGT
[ENA]
¡û
>W1911787349
QXZY01000007
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
228170
228098
-
Thr
GGT
[ENA]
¡û
>SRA1002938
SRR002326.110977
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
125
197
+
Thr
GGT
[SRA]
>SRA1003457
SRR002326.479523
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
123
195
+
Thr
GGT
[SRA]
>W1810393028
PYAW01000002
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
395044
395116
+
Thr
GGT
[ENA]
¡û
>W1810400830
PYGK01000006
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
27213
27285
+
Thr
GGT
[ENA]
¡û
>W1810532597
QCYL01000001
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
790501
790429
-
Thr
GGT
[ENA]
¡û
>W1810586508
QFFK01000005
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
143043
143115
+
Thr
GGT
[ENA]
¡û
>W1810608354
QGTG01000004
Bacteroidota
Chitinophaga sp. S165 [QGTG]
161909
161981
+
Thr
GGT
[ENA]
¡û
>W2010104562
BJYT01000006
Bacteroidota
Segetibacter aerophilus NBRC 106135 [BJYT]
229658
229730
+
Thr
GGT
[ENA]
¡û
>W2010106771
BKAU01000002
Bacteroidota
Chitinophaga cymbidii NBRC 109752 [BKAU]
456041
456113
+
Thr
GGT
[ENA]
¡û
>W2010912794
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
47356
47284
-
Thr
GGT
[ENA]
¡û
>W2011328620
QXMH01000002
Bacteroidota
Chitinophaga sp. T22 [QXMH]
372923
372995
+
Thr
GGT
[ENA]
¡û
>W2011338700
QXZY01000007
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
228170
228098
-
Thr
GGT
[ENA]
¡û
>W2011432217
RJJR01000002
Bacteroidota
Ferruginibacter sp. BO-59 [RJJR]
480020
480092
+
Thr
GGT
[ENA]
¡û
>W2011455673
RMBX01000006
Bacteroidota
Chitinophaga barathri YLT18 [RMBX]
176537
176609
+
Thr
GGT
[ENA]
¡û
>W2011458260
RPDH01000002
Bacteroidota
Chitinophaga sp. ZY74 [RPDH]
2245659
2245587
-
Thr
GGT
[ENA]
¡û
>W2011497101
RXLO01000007
Bacteroidota
Chitinophaga rhizosphaerae T16R-86 [RXLO]
88353
88425
+
Thr
GGT
[ENA]
¡û
>W2011639951
SMSK01000002
Bacteroidota
Segetibacter sp. 3557_3 [SMSK]
141040
141112
+
Thr
GGT
[ENA]
¡û
>W2011652402
SNZS01000004
Bacteroidota
Chitinophaga sp. OK723 [SNZS]
428720
428794
+
Thr
GGT
[ENA]
¡û
>W2012082541
VLLG01000003
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
491607
491681
+
Thr
GGT
[ENA]
¡û
>W2012103446
VOHS01000005
Bacteroidota
Chitinophaga pinensis YS-16 [VOHS]
159527
159455
-
Thr
GGT
[ENA]
¡û
>W2012156577
VUOC01000003
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
453589
453661
+
Thr
GGT
[ENA]
¡û
>W2012208574
VYQF01000001
Bacteroidota
Chitinophagaceae bacterium BR5-29 [VYQF]
1359256
1359184
-
Thr
GGT
[ENA]
¡û
>W2012349095
WJFD01000001
Bacteroidota
Chitinophaga sp. SYP-B3965 [WJFD]
3436291
3436219
-
Thr
GGT
[ENA]
¡û
>W2012426526
WRXN01000011
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
29496
29424
-
Thr
GGT
[ENA]
¡û
>W2012426564
WRXO01000002
Bacteroidota
Chitinophaga oryziterrae JCM 16595 [WRXO]
279353
279425
+
Thr
GGT
[ENA]
¡û
>W2110492962
JAFEWC010000001
Bacteroidota
Segetibacter sp. SYSU D00508 [JAFEWC]
1447593
1447665
+
Thr
GGT
[ENA]
¡û
>W2110546636
JAGHKP010000001
Bacteroidota
Chitinophaga chungangae MAH-28 [JAGHKP]
430316
430388
+
Thr
GGT
[ENA]
¡û
>W2110580023
JAGXJN010000014
Bacteroidota
Chitinophaga sp. GbtcB8 [JAGXJN]
137607
137679
+
Thr
GGT
[ENA]
¡û
>W2110668882
JAICCF010000001
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
2063659
2063587
-
Thr
GGT
[ENA]
¡û
>C201121007
CP043006
Bacteroidota
Chitinophaga sp. XS-30 [CP043006]
5544054
5543982
-
Thr
GGT
-
¡û
>C201212198
CP048113
Bacteroidota
Chitinophaga sp. H33E-04 [CP048113]
5942203
5942275
+
Thr
GGT
-
¡û
>C201307630
LR632928
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
376211
376283
+
Thr
GGT
-
¡û
>C201307683
LR632929
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
376213
376285
+
Thr
GGT
-
¡û
>C201307762
LR632930
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
5902597
5902525
-
Thr
GGT
-
¡û
>C211401645
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
1248842
1248914
+
Thr
GGT
-
¡û
>C211401696
CP083388
Bacteroidota
Ferruginibacter sp. KIS38-8 [CP083388]
1676458
1676530
+
Thr
GGT
-
¡û
>C231156281
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
5021672
5021600
-
Thr
GGT
-
¡û
>C231364532
CP095855
Bacteroidota
Chitinophaga filiformis YT5 [CP095855]
2044989
2045061
+
Thr
GGT
-
¡û
>C231507232
CP107006
Bacteroidota
Chitinophaga sp. R8 [CP107006]
309387
309459
+
Thr
GGT
-
¡û
>C241066010
CP042434
Bacteroidota
Arachidicoccus ginsenosidivorans Gsoil 809 [CP042434]
1015187
1015259
+
Thr
GGT
-
¡û
>C241281558
CP128362
Bacteroidota
Chitinophaga sp. LS1 [CP128362]
3052234
3052306
+
Thr
GGT
-
¡û
>C10103728
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
2043916
2043990
+
Thr
GGT
[Ensembl]
¡û
>W1610514947
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
650422
650350
-
Thr
GGT
[ENA]
¡û
>W1710500637
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
650422
650350
-
Thr
GGT
[ENA]
¡û
>W1710515146
FNBN01000006
Bacteroidota
Chitinophaga filiformis [FNBN]
157331
157257
-
Thr
GGT
[ENA]
¡û
>W1710533211
FNQY01000033
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
29689
29761
+
Thr
GGT
[ENA]
¡û
>W1710544833
FOBB01000012
Bacteroidota
Chitinophaga rupis [FOBB]
245305
245231
-
Thr
GGT
[ENA]
¡û
>W1710555244
FOJF01000001
Bacteroidota
Chitinophaga sp. YR573 [FOJF]
3523556
3523630
+
Thr
GGT
[ENA]
¡û
>W1710555315
FOJG01000002
Bacteroidota
Chitinophaga arvensicola [FOJG]
3561554
3561480
-
Thr
GGT
[ENA]
¡û
>W1710559148
FOMK01000013
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
31315
31387
+
Thr
GGT
[ENA]
¡û
>W1710570073
FOUX01000002
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
1364867
1364793
-
Thr
GGT
[ENA]
¡û
>W1710592511
FRCN01000004
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
185877
185803
-
Thr
GGT
[ENA]
¡û
>W1710594110
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
3723231
3723157
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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