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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.733497 (63 seq.)
>W1710864771
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
859776
859850
+
Glu
TTC
[ENA]
¡û
>W1710864772
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
860081
860155
+
Glu
TTC
[ENA]
¡û
>W1710864773
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
860327
860401
+
Glu
TTC
[ENA]
¡û
>W131160097
AQWH01000018
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
13865
13791
-
Glu
TTC
[ENA]
¡û
>W131160098
AQWH01000018
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
13675
13601
-
Glu
TTC
[ENA]
¡û
>W1711353309
MDDW01000005
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
211984
212058
+
Glu
TTC
[ENA]
¡û
>W1711353311
MDDW01000005
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
212965
213039
+
Glu
TTC
[ENA]
¡û
>W1711475569
MJUX01000005
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
35666
35740
+
Glu
TTC
[ENA]
¡û
>C171105017
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3317090
3317164
+
Glu
TTC
-
¡û
>C171105018
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3317280
3317354
+
Glu
TTC
-
¡û
>W141180661
AYGY02000052
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
72542
72468
-
Glu
TTC
[ENA]
¡û
>W141180662
AYGY02000052
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
72357
72283
-
Glu
TTC
[ENA]
¡û
>WENV170230584
CEQH01051074
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
123
197
+
Glu
TTC
[ENA]
¡û
>WENV170230585
CEQH01051074
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
315
389
+
Glu
TTC
[ENA]
¡û
>WENV170498879
CEVT01083113
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
269
195
-
Glu
TTC
[ENA]
¡û
>WENV170794838
MDSV01138471
[MDSV] marine metagenome; seawater
2193
2267
+
Glu
TTC
[ENA]
¡û
>WENV170794839
MDSV01138471
[MDSV] marine metagenome; seawater
2385
2459
+
Glu
TTC
[ENA]
¡û
>WENV170827842
MDSY01137530
[MDSY] marine metagenome; seawater
3079
3153
+
Glu
TTC
[ENA]
¡û
>WENV170827843
MDSY01137530
[MDSY] marine metagenome; seawater
3271
3345
+
Glu
TTC
[ENA]
¡û
>WENV170898712
MDTD01130116
[MDTD] marine metagenome; seawater
3364
3290
-
Glu
TTC
[ENA]
¡û
>W1911411004
NWUC01000005
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
4017
4091
+
Glu
TTC
[ENA]
¡û
>W1810365567
PVUG01000004
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
74413
74487
+
Glu
TTC
[ENA]
¡û
>W1810365568
PVUG01000004
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
74599
74673
+
Glu
TTC
[ENA]
¡û
>W1810489556
QBBW01000006
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
35666
35740
+
Glu
TTC
[ENA]
¡û
>W1810679215
QKPN01000015
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
59140
59066
-
Glu
TTC
[ENA]
¡û
>W1810679216
QKPN01000015
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
58884
58810
-
Glu
TTC
[ENA]
¡û
>W1810679217
QKPN01000015
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
58628
58554
-
Glu
TTC
[ENA]
¡û
>W2010725236
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
739801
739875
+
Glu
TTC
[ENA]
¡û
>W2010725237
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
739988
740062
+
Glu
TTC
[ENA]
¡û
>W2010725370
JACIEC010000001
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [JACIEC]
816829
816903
+
Glu
TTC
[ENA]
¡û
>W2010725371
JACIEC010000001
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [JACIEC]
817134
817208
+
Glu
TTC
[ENA]
¡û
>W2010725372
JACIEC010000001
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [JACIEC]
817380
817454
+
Glu
TTC
[ENA]
¡û
>W2011137751
NWUC01000005
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
4017
4091
+
Glu
TTC
[ENA]
¡û
>W2011613012
SJST01000003
Alphaproteobacteria
Oricola cellulosilytica KCTC 52183 [SJST]
606073
605999
-
Glu
TTC
[ENA]
¡û
>W2011627772
SMAR01000018
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
65091
65017
-
Glu
TTC
[ENA]
¡û
>W2011627773
SMAR01000018
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
64930
64856
-
Glu
TTC
[ENA]
¡û
>W2011694357
STGA01000021
Alphaproteobacteria
Rhizobium sp. FKY42 [STGA]
85374
85300
-
Glu
TTC
[ENA]
¡û
>W2011694358
STGA01000021
Alphaproteobacteria
Rhizobium sp. FKY42 [STGA]
85070
84996
-
Glu
TTC
[ENA]
¡û
>W2011694359
STGA01000021
Alphaproteobacteria
Rhizobium sp. FKY42 [STGA]
84823
84749
-
Glu
TTC
[ENA]
¡û
>W2011753814
SZVV01000032
Alphaproteobacteria
Rhizobiaceae bacterium LC148 [SZVV]
231
305
+
Glu
TTC
[ENA]
¡û
>W2011753816
SZVV01000032
Alphaproteobacteria
Rhizobiaceae bacterium LC148 [SZVV]
1217
1291
+
Glu
TTC
[ENA]
¡û
>W2011976158
VCLB01000009
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
5031
5105
+
Glu
TTC
[ENA]
¡û
>W2011976159
VCLB01000009
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
5218
5292
+
Glu
TTC
[ENA]
¡û
>W2110668792
JAICBX010000001
Alphaproteobacteria
Hoeflea sp. WL0058 [JAICBX]
1660554
1660628
+
Glu
TTC
[ENA]
¡û
>W2110688726
JAINFK010000009
Alphaproteobacteria
Oricola cellulosilytica JCM 19534 [JAINFK]
24732
24806
+
Glu
TTC
[ENA]
¡û
>C211232417
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2247604
2247678
+
Glu
TTC
-
¡û
>C211232418
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2247789
2247863
+
Glu
TTC
-
¡û
>C241135214
CP049250
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [CP049250]
2743944
2744018
+
Glu
TTC
-
¡û
>C241135215
CP049250
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [CP049250]
2744249
2744323
+
Glu
TTC
-
¡û
>C241135216
CP049250
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [CP049250]
2744495
2744569
+
Glu
TTC
-
¡û
>C241288046
CP129382
Alphaproteobacteria
Rhizobium sp. SSA_523 SSA5.23 [CP129382]
746820
746746
-
Glu
TTC
-
¡û
>C241288047
CP129382
Alphaproteobacteria
Rhizobium sp. SSA_523 SSA5.23 [CP129382]
746434
746360
-
Glu
TTC
-
¡û
>C241288048
CP129382
Alphaproteobacteria
Rhizobium sp. SSA_523 SSA5.23 [CP129382]
746184
746110
-
Glu
TTC
-
¡û
>W1511591791
LBHV01000013
Alphaproteobacteria
Rhizobium sp. LC145 [LBHV]
43551
43625
+
Glu
TTC
[ENA]
¡û
>W1511591793
LBHV01000013
Alphaproteobacteria
Rhizobium sp. LC145 [LBHV]
44537
44611
+
Glu
TTC
[ENA]
¡û
>C161070390
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1876886
1876812
-
Glu
TTC
[Ensembl]
¡û
>C161070391
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1876701
1876627
-
Glu
TTC
[Ensembl]
¡û
>W1610727117
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
859776
859850
+
Glu
TTC
[ENA]
¡û
>W1610727118
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
860081
860155
+
Glu
TTC
[ENA]
¡û
>W1610727119
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
860327
860401
+
Glu
TTC
[ENA]
¡û
>W1710015702
AQRB01000001
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
840746
840672
-
Glu
TTC
[ENA]
¡û
>W1710607675
FXAF01000011
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
133215
133141
-
Glu
TTC
[ENA]
¡û
>W1710607676
FXAF01000011
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
132988
132914
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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