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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.733520 (73 seq.)
>WENV180345840
OBLN01007430
[OBLN] sediment metagenome; sediment
995
921
-
Asn
GTT
[ENA]
¡û
>WENV183515256
OMKS01053884
[OMKS] sediment metagenome; hot spring sediment
294
368
+
Asn
GTT
[ENA]
¡û
>WENV170012766
ASRO01000236
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2763
2689
-
Asn
GTT
[ENA]
¡û
>WENV170012851
ASRP01001525
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2081
2155
+
Asn
GTT
[ENA]
¡û
>WENV170012946
ASRQ01000145
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2105
2179
+
Asn
GTT
[ENA]
¡û
>WENV170014496
AYRG01003268
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8
82
+
Asn
GTT
[ENA]
¡û
>WENV170575808
FPHP01000041
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
986
912
-
Asn
GTT
[ENA]
¡û
>WENV170575809
FPHP01000044
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
74851
74777
-
Asn
GTT
[ENA]
¡û
>WENV170646423
JQGR01003103
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
307
233
-
Asn
GTT
[ENA]
¡û
>WENV170657544
JTFP01000893
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
18
92
+
Asn
GTT
[ENA]
¡û
>WENV170658407
JTFP01105228
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
85
11
-
Asn
GTT
[ENA]
¡û
>C181197002
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1906097
1906023
-
Asn
GTT
-
¡û
>C181197003
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905991
1905917
-
Asn
GTT
-
¡û
>C181197004
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905890
1905816
-
Asn
GTT
-
¡û
>C191084500
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1923053
1922979
-
Asn
GTT
-
¡û
>C191084667
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940758
1940684
-
Asn
GTT
-
¡û
>C191084668
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940652
1940578
-
Asn
GTT
-
¡û
>C191084669
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940552
1940478
-
Asn
GTT
-
¡û
>W1911413057
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39949
39875
-
Asn
GTT
[ENA]
¡û
>W1911413058
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39843
39769
-
Asn
GTT
[ENA]
¡û
>W1911413059
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39743
39669
-
Asn
GTT
[ENA]
¡û
>W1911413118
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16267
16341
+
Asn
GTT
[ENA]
¡û
>W1911413119
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16373
16447
+
Asn
GTT
[ENA]
¡û
>W1911413120
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16473
16547
+
Asn
GTT
[ENA]
¡û
>W1911419395
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21461
21535
+
Asn
GTT
[ENA]
¡û
>W1911419396
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21567
21641
+
Asn
GTT
[ENA]
¡û
>W1911419397
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21667
21741
+
Asn
GTT
[ENA]
¡û
>W1911424163
NXFY01000004
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
70219
70145
-
Asn
GTT
[ENA]
¡û
>W1911426262
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33891
33817
-
Asn
GTT
[ENA]
¡û
>W1911426263
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33785
33711
-
Asn
GTT
[ENA]
¡û
>W1911426264
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33684
33610
-
Asn
GTT
[ENA]
¡û
>W1911576282
PDJX01000003
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
110314
110240
-
Asn
GTT
[ENA]
¡û
>W1911576337
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33826
33752
-
Asn
GTT
[ENA]
¡û
>W1911576338
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33720
33646
-
Asn
GTT
[ENA]
¡û
>W1911576339
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33620
33546
-
Asn
GTT
[ENA]
¡û
>W1911576488
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83540
83614
+
Asn
GTT
[ENA]
¡û
>W1911576648
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447094
447020
-
Asn
GTT
[ENA]
¡û
>W1911576650
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
446912
446838
-
Asn
GTT
[ENA]
¡û
>W1810295934
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4217
4143
-
Asn
GTT
[ENA]
¡û
>W1810295935
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4111
4037
-
Asn
GTT
[ENA]
¡û
>W1810295936
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4011
3937
-
Asn
GTT
[ENA]
¡û
>W2011138850
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39949
39875
-
Asn
GTT
[ENA]
¡û
>W2011138851
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39843
39769
-
Asn
GTT
[ENA]
¡û
>W2011138852
NWVW01000007
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
39743
39669
-
Asn
GTT
[ENA]
¡û
>W2011138911
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16267
16341
+
Asn
GTT
[ENA]
¡û
>W2011138912
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16373
16447
+
Asn
GTT
[ENA]
¡û
>W2011138913
NWVX01000019
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16473
16547
+
Asn
GTT
[ENA]
¡û
>W2011139293
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21461
21535
+
Asn
GTT
[ENA]
¡û
>W2011139294
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21567
21641
+
Asn
GTT
[ENA]
¡û
>W2011139295
NXAO01000063
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21667
21741
+
Asn
GTT
[ENA]
¡û
>W2011143933
NXFY01000004
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
70219
70145
-
Asn
GTT
[ENA]
¡û
>W2011145120
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33891
33817
-
Asn
GTT
[ENA]
¡û
>W2011145121
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33785
33711
-
Asn
GTT
[ENA]
¡û
>W2011145122
NXIF01000013
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
33684
33610
-
Asn
GTT
[ENA]
¡û
>W2011186096
PDJX01000003
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
110314
110240
-
Asn
GTT
[ENA]
¡û
>W2011186151
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33826
33752
-
Asn
GTT
[ENA]
¡û
>W2011186152
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33720
33646
-
Asn
GTT
[ENA]
¡û
>W2011186153
PDJY01000001
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
33620
33546
-
Asn
GTT
[ENA]
¡û
>W2011186302
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83540
83614
+
Asn
GTT
[ENA]
¡û
>W2011186462
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447094
447020
-
Asn
GTT
[ENA]
¡û
>W2011186464
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
446912
446838
-
Asn
GTT
[ENA]
¡û
>W2011544805
SDID01000012
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
217
143
-
Asn
GTT
[ENA]
¡û
>W2011751859
SZPX01000005
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
200037
200111
+
Asn
GTT
[ENA]
¡û
>W2110497630
JAFHKK010000002
Campylobacterota
Sulfurospirillum sp. T05 [JAFHKK]
120745
120819
+
Asn
GTT
[ENA]
¡û
>C211052448
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
2069181
2069255
+
Asn
GTT
-
¡û
>C211052456
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1590019
1589945
-
Asn
GTT
-
¡û
>C241068625
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
1950966
1950892
-
Asn
GTT
-
¡û
>C241068626
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
1950860
1950786
-
Asn
GTT
-
¡û
>C241068627
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
1950760
1950686
-
Asn
GTT
-
¡û
>C241081532
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
685573
685499
-
Asn
GTT
-
¡û
>W1710602847
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10330
10256
-
Asn
GTT
[ENA]
¡û
>W1710602848
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10224
10150
-
Asn
GTT
[ENA]
¡û
>W1710602849
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10124
10050
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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