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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.733793 (89 seq.)
>W131242027
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
680891
680965
+
Gln
TTG
[ENA]
¡û
>W1711642831
MPZQ01000002
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
336670
336744
+
Gln
TTG
[ENA]
¡û
>W1711642879
MPZR01000002
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
454307
454233
-
Gln
TTG
[ENA]
¡û
>W1711642950
MPZS01000003
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
337908
337834
-
Gln
TTG
[ENA]
¡û
>W1711642962
MPZT01000002
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
65990
66064
+
Gln
TTG
[ENA]
¡û
>W1711643026
MPZU01000004
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
195490
195564
+
Gln
TTG
[ENA]
¡û
>W1711643058
MPZV01000002
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
159821
159895
+
Gln
TTG
[ENA]
¡û
>W1711643120
MPZW01000007
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
974
900
-
Gln
TTG
[ENA]
¡û
>W1711643151
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
553963
554037
+
Gln
TTG
[ENA]
¡û
>W1711709198
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3175831
3175905
+
Gln
TTG
[ENA]
¡û
>W1711709233
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3538236
3538310
+
Gln
TTG
[ENA]
¡û
>W1711709299
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
298134
298060
-
Gln
TTG
[ENA]
¡û
>W1711947201
NBNX01000003
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
27360
27434
+
Gln
TTG
[ENA]
¡û
>W1711947251
NBNY01000002
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
599600
599526
-
Gln
TTG
[ENA]
¡û
>W1711947290
NBNZ01000002
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
552576
552502
-
Gln
TTG
[ENA]
¡û
>W1711947329
NBOA01000002
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
556489
556415
-
Gln
TTG
[ENA]
¡û
>W1711947384
NBOB01000003
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
465
391
-
Gln
TTG
[ENA]
¡û
>W1711959012
NBXF01000012
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
10940
10866
-
Gln
TTG
[ENA]
¡û
>C171032474
CP014596
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
307451
307377
-
Gln
TTG
-
¡û
>C171067773
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2463725
2463799
+
Gln
TTG
-
¡û
>C171094353
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
3197942
3198016
+
Gln
TTG
-
¡û
>C171105937
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
787457
787383
-
Gln
TTG
-
¡û
>W141065876
AQRC01000015
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
117770
117844
+
Gln
TTG
[ENA]
¡û
>W141082594
AUND01000021
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
1619
1693
+
Gln
TTG
[ENA]
¡û
>WENV170484419
CEVN01020547
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
526
600
+
Gln
TTG
[ENA]
¡û
>WENV170811848
MDSW01173814
[MDSW] marine metagenome; seawater
10779
10705
-
Gln
TTG
[ENA]
¡û
>C181060524
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
926789
926863
+
Gln
TTG
-
¡û
>W1910808400
MUAV01000016
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
102892
102966
+
Gln
TTG
[ENA]
¡û
>W1911281161
NTHN01000201
Alphaproteobacteria
Yangia sp. SAOS 153D [NTHN]
3291
3365
+
Gln
TTG
[ENA]
¡û
>W1911283642
NTJD01000007
Alphaproteobacteria
Thioclava arenosa CAU 1312 [NTJD]
141988
141914
-
Gln
TTG
[ENA]
¡û
>W1911495015
OBMN01000002
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
114635
114709
+
Gln
TTG
[ENA]
¡û
>W1911538672
OMOQ01000003
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
302963
302889
-
Gln
TTG
[ENA]
¡û
>W1911575816
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
3030043
3030117
+
Gln
TTG
[ENA]
¡û
>W1810351386
PVEP01000014
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
58787
58861
+
Gln
TTG
[ENA]
¡û
>W1810486772
QAYC01000014
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
689
615
-
Gln
TTG
[ENA]
¡û
>W1810584509
QFBB01000001
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
54582
54656
+
Gln
TTG
[ENA]
¡û
>W1810722988
QNVX01000048
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
32726
32800
+
Gln
TTG
[ENA]
¡û
>W2010451946
JAAEAJ010000002
Alphaproteobacteria
Rhodovulum sulfidophilum SE1 [JAAEAJ]
11890
11816
-
Gln
TTG
[ENA]
¡û
>W2010468725
JAAGNU010000060
Alphaproteobacteria
Yangia sp. PrR004 [JAAGNU]
11164
11090
-
Gln
TTG
[ENA]
¡û
>W2010469709
JAAGOU010000020
Alphaproteobacteria
Yangia sp. PrR002 [JAAGOU]
72735
72809
+
Gln
TTG
[ENA]
¡û
>W2010469729
JAAGOV010000028
Alphaproteobacteria
Yangia sp. PrR003 [JAAGOV]
150635
150709
+
Gln
TTG
[ENA]
¡û
>W2010469752
JAAGOV010000049
Alphaproteobacteria
Yangia sp. PrR003 [JAAGOV]
44831
44905
+
Gln
TTG
[ENA]
¡û
>W2010469940
JAAGOZ010000011
Alphaproteobacteria
Yangia sp. PrR007 [JAAGOZ]
148181
148255
+
Gln
TTG
[ENA]
¡û
>W2010913331
MUAV01000016
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
102892
102966
+
Gln
TTG
[ENA]
¡û
>W2011074467
NTHN01000201
Alphaproteobacteria
Yangia sp. SAOS 153D [NTHN]
3291
3365
+
Gln
TTG
[ENA]
¡û
>W2011074702
NTJD01000007
Alphaproteobacteria
Thioclava arenosa CAU 1312 [NTJD]
141988
141914
-
Gln
TTG
[ENA]
¡û
>W2011155919
OBMN01000002
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
114635
114709
+
Gln
TTG
[ENA]
¡û
>W2011168902
OMOQ01000003
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
302963
302889
-
Gln
TTG
[ENA]
¡û
>W2011185630
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
3030043
3030117
+
Gln
TTG
[ENA]
¡û
>W2011654497
SOBC01000002
Alphaproteobacteria
Thioclava sp. ES.032 [SOBC]
1085431
1085357
-
Gln
TTG
[ENA]
¡û
>W2011658537
SOEB01000013
Alphaproteobacteria
Rhodovulum visakhapatnamense JA181 [SOEB]
125868
125942
+
Gln
TTG
[ENA]
¡û
>W2011690662
SSMD01000005
Alphaproteobacteria
Youngimonas vesicularis CC-AMW-E [SSMD]
12546
12472
-
Gln
TTG
[ENA]
¡û
>W2012228320
WBJS01000002
Alphaproteobacteria
Thioclava sp. JE_KL1 [WBJS]
479261
479187
-
Gln
TTG
[ENA]
¡û
>W2012445182
WUMU01000003
Alphaproteobacteria
Pseudooceanicola sp. GBMRC 2024 [WUMU]
11676
11602
-
Gln
TTG
[ENA]
¡û
>W2012445208
WUMU01000024
Alphaproteobacteria
Pseudooceanicola sp. GBMRC 2024 [WUMU]
133925
133851
-
Gln
TTG
[ENA]
¡û
>W2110315447
JADFFK010000023
Alphaproteobacteria
Salipiger mangrovisoli 6D45A [JADFFK]
86158
86232
+
Gln
TTG
[ENA]
¡û
>W2110447505
JAESIL010000112
Alphaproteobacteria
Rhodovulum visakhapatnamense AB19 [JAESIL]
5208
5134
-
Gln
TTG
[ENA]
¡û
>W2110447553
JAESIM010000103
Alphaproteobacteria
Rhodovulum visakhapatnamense AB26 [JAESIM]
2145
2219
+
Gln
TTG
[ENA]
¡û
>W2110447865
JAESJD010000127
Alphaproteobacteria
Rhodovulum sulfidophilum AB14 [JAESJD]
6209
6283
+
Gln
TTG
[ENA]
¡û
>W2110447881
JAESJE010000037
Alphaproteobacteria
Rhodovulum sulfidophilum AB16 [JAESJE]
5600
5674
+
Gln
TTG
[ENA]
¡û
>W2110447951
JAESJF010000823
Alphaproteobacteria
Rhodovulum sulfidophilum AB20 [JAESJF]
46
120
+
Gln
TTG
[ENA]
¡û
>W2110447992
JAESJG010000226
Alphaproteobacteria
Rhodovulum sulfidophilum AB22 [JAESJG]
1201
1127
-
Gln
TTG
[ENA]
¡û
>W2110448022
JAESJH010000026
Alphaproteobacteria
Rhodovulum sulfidophilum AB23 [JAESJH]
58586
58660
+
Gln
TTG
[ENA]
¡û
>W2110448064
JAESJI010000018
Alphaproteobacteria
Rhodovulum sulfidophilum AB33 [JAESJI]
1218
1144
-
Gln
TTG
[ENA]
¡û
>W2110448111
JAESJJ010000008
Alphaproteobacteria
Rhodovulum sulfidophilum AB35 [JAESJJ]
75019
74945
-
Gln
TTG
[ENA]
¡û
>W2110575122
JAGTUU010000006
Alphaproteobacteria
Aestuariicoccus sp. KMU-90 [JAGTUU]
58000
57926
-
Gln
TTG
[ENA]
¡û
>W2110606480
JAHIAB010000001
Alphaproteobacteria
Pseudooceanicola endophyticus CBS1P-1 [JAHIAB]
608951
609025
+
Gln
TTG
[ENA]
¡û
>W2110606487
JAHIAB010000001
Alphaproteobacteria
Pseudooceanicola endophyticus CBS1P-1 [JAHIAB]
11732
11658
-
Gln
TTG
[ENA]
¡û
>W2110650752
JAHVAI010000013
Alphaproteobacteria
Sinirhodobacter sp. B57 [JAHVAI]
14461
14535
+
Gln
TTG
[ENA]
¡û
>C211094091
CP053562
Alphaproteobacteria
Thioclava electrotropha Elox9 [CP053562]
3119761
3119835
+
Gln
TTG
-
¡û
>W2110701400
JAIUZU010000003
Alphaproteobacteria
Salipiger pacificus AmN21-11 [JAIUZU]
302715
302641
-
Gln
TTG
[ENA]
¡û
>W2110701411
JAIUZV010000001
Alphaproteobacteria
Salipiger pacificus AmN0-18 [JAIUZV]
194013
194087
+
Gln
TTG
[ENA]
¡û
>W2110702043
JAIVAG010000014
Alphaproteobacteria
Salipiger pacificus AcN7-15 [JAIVAG]
164487
164561
+
Gln
TTG
[ENA]
¡û
>W2110704353
JAIVKX010000004
Alphaproteobacteria
Salipiger pacificus KcN7-14 [JAIVKX]
302702
302628
-
Gln
TTG
[ENA]
¡û
>C231112467
CP067124
Alphaproteobacteria
Paracoccus alcaliphilus TK 1015 [CP067124]
3196922
3196996
+
Gln
TTG
-
¡û
>W2110751705
NHRZ01000052
Alphaproteobacteria
Rhodovulum sulfidophilum IM796 [NHRZ]
28924
28998
+
Gln
TTG
[ENA]
¡û
>C231565124
CP115170
Alphaproteobacteria
Sinirhodobacter sp. HNIBRBA609 [CP115170]
697212
697286
+
Gln
TTG
-
¡û
>C241275476
CP127165
Alphaproteobacteria
Marivivens sp. LCG002 [CP127165]
344096
344022
-
Gln
TTG
-
¡û
>C161001482
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
980230
980156
-
Gln
TTG
[Ensembl]
¡û
>C161087735
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3759259
3759333
+
Gln
TTG
-
¡û
>C161087784
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3723757
3723831
+
Gln
TTG
[Ensembl]
¡û
>W1610081480
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
161145
161071
-
Gln
TTG
[ENA]
¡û
>W1710080131
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
161145
161071
-
Gln
TTG
[ENA]
¡û
>W1710516257
FNCL01000015
Alphaproteobacteria
Alloyangia pacifica [FNCL]
47508
47434
-
Gln
TTG
[ENA]
¡û
>W1710540953
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
63933
63859
-
Gln
TTG
[ENA]
¡û
>W1710547679
FODE01000006
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
32361
32435
+
Gln
TTG
[ENA]
¡û
>W1710576248
FOZW01000014
Alphaproteobacteria
Alloyangia pacifica [FOZW]
47911
47837
-
Gln
TTG
[ENA]
¡û
>W1710592354
FRCK01000001
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
223343
223417
+
Gln
TTG
[ENA]
¡û
>W1710599134
FTOM01000002
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
698631
698557
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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