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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.734063 (56 seq.)
>W1710858027
LMAR01000044
Alphaproteobacteria
Bosea thiooxidans [LMAR]
181502
181576
+
Thr
GGT
[ENA]
¡û
>W1711502383
MKSQ01000013
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
19635
19561
-
Thr
GGT
[ENA]
¡û
>W1711505848
MKVW01000009
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
688788
688714
-
Thr
GGT
[ENA]
¡û
>WENV180032067
FTJU01036556
[FTJU] metagenome; soil
767
841
+
Thr
GGT
[ENA]
¡û
>W141220768
AZYE01000819
Alphaproteobacteria
Microvirga lupini [AZYE]
2284
2358
+
Thr
GGT
[ENA]
¡û
>W141276714
JAEA01000003
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
302523
302597
+
Thr
GGT
[ENA]
¡û
>C08001589
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
3100608
3100682
+
Thr
GGT
[Ensembl]
¡û
>C181020283
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
1533604
1533678
+
Thr
GGT
-
¡û
>C181179107
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3471060
3471134
+
Thr
GGT
-
¡û
>W141810221
JPUG01000077
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
86214
86140
-
Thr
GGT
[ENA]
¡û
>W141815704
JQJH01000004
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
74100
74026
-
Thr
GGT
[ENA]
¡û
>W1911653562
QDGA01000009
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
97982
97908
-
Thr
GGT
[ENA]
¡û
>W1810534705
QDAH01000001
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
305388
305462
+
Thr
GGT
[ENA]
¡û
>W1810763427
QQBB01000006
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
126157
126083
-
Thr
GGT
[ENA]
¡û
>W1810887336
QUOY01000002
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
213609
213683
+
Thr
GGT
[ENA]
¡û
>W2010439704
JAAAXI010000014
Alphaproteobacteria
Microvirga sp. SYSU G3D207 [JAAAXI]
61002
61076
+
Thr
GGT
[ENA]
¡û
>W2010439705
JAAAXI010000014
Alphaproteobacteria
Microvirga sp. SYSU G3D207 [JAAAXI]
73485
73559
+
Thr
GGT
[ENA]
¡û
>W2010439760
JAAAXJ010000011
Alphaproteobacteria
Microvirga sp. SYSU G3D203 [JAAAXJ]
23984
23910
-
Thr
GGT
[ENA]
¡û
>W2010439761
JAAAXJ010000011
Alphaproteobacteria
Microvirga sp. SYSU G3D203 [JAAAXJ]
11501
11427
-
Thr
GGT
[ENA]
¡û
>W2010593046
JABEPP010000007
Alphaproteobacteria
Enterovirga sp. DB1703 [JABEPP]
158297
158223
-
Thr
GGT
[ENA]
¡û
>W2010609865
JABMLM010000282
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
13215
13141
-
Thr
GGT
[ENA]
¡û
>W2010609900
JABMLM010000356
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
49271
49345
+
Thr
GGT
[ENA]
¡û
>W2010680704
JACDXJ010000001
Alphaproteobacteria
Microvirga sp. Marseille-Q2068 [JACDXJ]
1745840
1745766
-
Thr
GGT
[ENA]
¡û
>W2010714684
JACHWB010000002
Alphaproteobacteria
Microvirga lupini AT3.9 [JACHWB]
779129
779203
+
Thr
GGT
[ENA]
¡û
>W2010724124
JACIDC010000015
Alphaproteobacteria
Microvirga flocculans DSM 15743 [JACIDC]
13610
13684
+
Thr
GGT
[ENA]
¡û
>W2011237121
QDGA01000009
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
97982
97908
-
Thr
GGT
[ENA]
¡û
>W2011670512
SPJX01000012
Alphaproteobacteria
Microvirga pakistanensis NCCP-1258 [SPJX]
29995
29921
-
Thr
GGT
[ENA]
¡û
>W2011798247
UCLR01000010
Alphaproteobacteria
Rhizobiales bacterium [UCLR]
244159
244233
+
Thr
GGT
[ENA]
¡û
>W2012107864
VOSJ01000068
Alphaproteobacteria
Microvirga tunisiensis M8 [VOSJ]
883
809
-
Thr
GGT
[ENA]
¡û
>W2012107921
VOSK01000068
Alphaproteobacteria
Microvirga tunisiensis Lmie10 [VOSK]
883
809
-
Thr
GGT
[ENA]
¡û
>W2012445874
WURB01000021
Alphaproteobacteria
Microvirga makkahensis KCTC 23863 [WURB]
69554
69480
-
Thr
GGT
[ENA]
¡û
>W2110283093
JACXAB010000028
Alphaproteobacteria
Microvirga sp. BT688 [JACXAB]
26432
26358
-
Thr
GGT
[ENA]
¡û
>W2110372417
JADQDN010000002
Alphaproteobacteria
Microvirga sp. BT290 [JADQDN]
521266
521340
+
Thr
GGT
[ENA]
¡û
>W2110427283
JAELXT010000002
Alphaproteobacteria
Microvirga sp. BT325 [JAELXT]
313457
313531
+
Thr
GGT
[ENA]
¡û
>W2110439975
JAEQMY010000012
Alphaproteobacteria
Microvirga aerilata 5420S-16 [JAEQMY]
115036
115110
+
Thr
GGT
[ENA]
¡û
>W2110444875
JAERQD010000013
Alphaproteobacteria
Microvirga zambiensis WSM3693 [JAERQD]
50249
50175
-
Thr
GGT
[ENA]
¡û
>W2110444920
JAERQE010000006
Alphaproteobacteria
Microvirga soli R491 [JAERQE]
22706
22780
+
Thr
GGT
[ENA]
¡û
>W2110462984
JAFBID010000025
Alphaproteobacteria
Microvirga arabica SV2184P [JAFBID]
8617
8691
+
Thr
GGT
[ENA]
¡û
>W2110462985
JAFBID010000025
Alphaproteobacteria
Microvirga arabica SV2184P [JAFBID]
17885
17959
+
Thr
GGT
[ENA]
¡û
>W2110484233
JAFEMD010000032
Alphaproteobacteria
Microvirga sp. BT689 [JAFEMD]
57809
57735
-
Thr
GGT
[ENA]
¡û
>W2110522961
JAGEML010000070
Alphaproteobacteria
Microvirga sp. 3-52 [JAGEML]
9621
9547
-
Thr
GGT
[ENA]
¡û
>W2110563283
JAGPUP010000522
Alphaproteobacteria
Microvirga sp. HBU67558 [JAGPUP]
32292
32366
+
Thr
GGT
[ENA]
¡û
>W2110584261
JAHAMK010000047
Alphaproteobacteria
Microvirga sp. 3-52 [JAHAMK]
15455
15529
+
Thr
GGT
[ENA]
¡û
>C201110365
CP042331
Alphaproteobacteria
Bosea sp. F3-2 [CP042331]
2922174
2922248
+
Thr
GGT
-
¡û
>C211259059
CP069354
Alphaproteobacteria
Microvirga sp. VF16 [CP069354]
4519849
4519923
+
Thr
GGT
-
¡û
>W2110718235
JAJBBR010000005
Alphaproteobacteria
Microvirga sp. SM9 [JAJBBR]
368227
368301
+
Thr
GGT
[ENA]
¡û
>C231459524
CP102845
Alphaproteobacteria
Microvirga sp. R24 [CP102845]
4403852
4403926
+
Thr
GGT
-
¡û
>C241096464
CP045423
Alphaproteobacteria
Microvirga thermotolerans HR1 [CP045423]
1096808
1096734
-
Thr
GGT
-
¡û
>C241358890
CP141048
Alphaproteobacteria
Microvirga lotononidis HAMBI_3237 [CP141048]
2807404
2807330
-
Thr
GGT
-
¡û
>W1511624285
LCYG01000067
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
26406
26480
+
Thr
GGT
[ENA]
¡û
>W1511624286
LCYG01000067
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
31954
32028
+
Thr
GGT
[ENA]
¡û
>W121068060
AJUA01000089
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
111189
111115
-
Thr
GGT
[ENA]
¡û
>W1610720373
LMAR01000044
Alphaproteobacteria
Bosea thiooxidans [LMAR]
181502
181576
+
Thr
GGT
[ENA]
¡û
>W1710507583
FMVJ01000012
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
42194
42268
+
Thr
GGT
[ENA]
¡û
>W1710535130
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
4315185
4315259
+
Thr
GGT
[ENA]
¡û
>W1710603280
FUYX01000004
Alphaproteobacteria
Bosea thiooxidans [FUYX]
350081
350155
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK