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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.734068 (84 seq.)
>WENV010998
AACY020299166
Marine microbial communities from Global Ocean Sampling (GOS)
1399
1323
-
Asn
GTT
[ENA]
>W131222259
AUBC01000032
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
34373
34299
-
Asn
GTT
[ENA]
¡û
>W131223616
AUCF01000001
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
381823
381749
-
Asn
GTT
[ENA]
¡û
>W131223633
AUCF01000006
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
106405
106479
+
Asn
GTT
[ENA]
¡û
>WENV180585640
OCOL01049376
[OCOL] marine metagenome; ENVO:00002010
267
193
-
Asn
GTT
[ENA]
¡û
>WENV180690543
OCZS010010237
[OCZS] soil metagenome; soil
493
567
+
Asn
GTT
[ENA]
¡û
>W141220779
AZYE01001755
Alphaproteobacteria
Microvirga lupini [AZYE]
2316
2242
-
Asn
GTT
[ENA]
¡û
>WENV019451
AACY020532686
Marine microbial communities from Global Ocean Sampling (GOS)
2333
2257
-
Asn
GTT
[ENA]
>WENV019460
AACY020532921
Marine microbial communities from Global Ocean Sampling (GOS)
1480
1556
+
Asn
GTT
[ENA]
>W141276749
JAEA01000020
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
23179
23253
+
Asn
GTT
[ENA]
¡û
>WENV019497
AACY020533279
Marine microbial communities from Global Ocean Sampling (GOS)
2190
2264
+
Asn
GTT
[ENA]
>WENV183749158
PPFU01127700
[PPFU] hypolithon metagenome; Antarctic Hypolithon
206
132
-
Asn
GTT
[ENA]
¡û
>WENV170018831
BBPD01001315
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2244
2170
-
Asn
GTT
[ENA]
¡û
>WENV170019715
BBPE01000204
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4773
4847
+
Asn
GTT
[ENA]
¡û
>WENV170020187
BBPE01003898
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4358
4432
+
Asn
GTT
[ENA]
¡û
>WENV170122718
CENN01174573
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
560
634
+
Asn
GTT
[ENA]
¡û
>WENV170133056
CENU01001227
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
121
47
-
Asn
GTT
[ENA]
¡û
>WENV170323682
CESS01016301
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
930
1004
+
Asn
GTT
[ENA]
¡û
>WENV170709333
LNFM01000265
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
99743
99817
+
Asn
GTT
[ENA]
¡û
>WENV170711403
LNFM01005101
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19143
19069
-
Asn
GTT
[ENA]
¡û
>WENV170865631
MDTB01121983
[MDTB] marine metagenome; seawater
1230
1304
+
Asn
GTT
[ENA]
¡û
>C181020302
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
5408368
5408294
-
Asn
GTT
-
¡û
>C181179106
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
2442687
2442761
+
Asn
GTT
-
¡û
>W141810208
JPUG01000068
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
165696
165622
-
Asn
GTT
[ENA]
¡û
>W1910613265
LGQZ01000009
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
17420
17494
+
Asn
GTT
[ENA]
¡û
>W1910613279
LGQZ01000014
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
121715
121641
-
Asn
GTT
[ENA]
¡û
>W1911653587
QDGA01000034
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
11147
11073
-
Asn
GTT
[ENA]
¡û
>W1810534742
QDAH01000043
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
45351
45425
+
Asn
GTT
[ENA]
¡û
>W1810706691
QMKH01000007
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
34229
34303
+
Asn
GTT
[ENA]
¡û
>W1810735491
QOIO01000010
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
104494
104568
+
Asn
GTT
[ENA]
¡û
>W1810763406
QQBB01000003
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
208208
208282
+
Asn
GTT
[ENA]
¡û
>W2010104596
BJYU01000008
Alphaproteobacteria
Microvirga aerophila NBRC 106136 [BJYU]
34758
34684
-
Asn
GTT
[ENA]
¡û
>W2010433312
JAAABL010000057
Alphaproteobacteria
Rhodovarius lipocyclicus CCUG 44693 [JAAABL]
2728
2654
-
Asn
GTT
[ENA]
¡û
>W2010439667
JAAAXI010000002
Alphaproteobacteria
Microvirga sp. SYSU G3D207 [JAAAXI]
372371
372297
-
Asn
GTT
[ENA]
¡û
>W2010439721
JAAAXJ010000001
Alphaproteobacteria
Microvirga sp. SYSU G3D203 [JAAAXJ]
476200
476126
-
Asn
GTT
[ENA]
¡û
>W2010568008
JAATJS010000004
Alphaproteobacteria
Microvirga sp. c23x22 [JAATJS]
431549
431623
+
Asn
GTT
[ENA]
¡û
>W2010609930
JABMLM010000385
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
63671
63597
-
Asn
GTT
[ENA]
¡û
>W2010609949
JABMLM010000393
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
165435
165361
-
Asn
GTT
[ENA]
¡û
>W2010680676
JACDXJ010000001
Alphaproteobacteria
Microvirga sp. Marseille-Q2068 [JACDXJ]
3254503
3254577
+
Asn
GTT
[ENA]
¡û
>W2010714697
JACHWB010000003
Alphaproteobacteria
Microvirga lupini AT3.9 [JACHWB]
516187
516113
-
Asn
GTT
[ENA]
¡û
>W2010724129
JACIDC010000021
Alphaproteobacteria
Microvirga flocculans DSM 15743 [JACIDC]
3535
3461
-
Asn
GTT
[ENA]
¡û
>W2010724496
JACIDJ010000002
Alphaproteobacteria
Roseococcus suduntuyensis DSM 19979 [JACIDJ]
341096
341170
+
Asn
GTT
[ENA]
¡û
>W2010772867
LGQZ01000009
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
17420
17494
+
Asn
GTT
[ENA]
¡û
>W2010772881
LGQZ01000014
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
121715
121641
-
Asn
GTT
[ENA]
¡û
>W2011237146
QDGA01000034
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
11147
11073
-
Asn
GTT
[ENA]
¡û
>W2011615194
SJXD01000011
Alphaproteobacteria
Roseococcus sp. SYP-B2431 [SJXD]
1070088
1070162
+
Asn
GTT
[ENA]
¡û
>W2011667272
SPDV01000001
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
130017
129943
-
Asn
GTT
[ENA]
¡û
>W2011670532
SPJX01000185
Alphaproteobacteria
Microvirga pakistanensis NCCP-1258 [SPJX]
90826
90752
-
Asn
GTT
[ENA]
¡û
>W2011976654
VCMV01000007
Alphaproteobacteria
Microvirga sp. CDVBN77 [VCMV]
54116
54042
-
Asn
GTT
[ENA]
¡û
>W2012107859
VOSJ01000045
Alphaproteobacteria
Microvirga tunisiensis M8 [VOSJ]
30707
30781
+
Asn
GTT
[ENA]
¡û
>W2012107911
VOSK01000014
Alphaproteobacteria
Microvirga tunisiensis Lmie10 [VOSK]
30707
30781
+
Asn
GTT
[ENA]
¡û
>W2012156481
VUOA01000036
Alphaproteobacteria
Salinarimonas sp. BN140002 [VUOA]
148157
148083
-
Asn
GTT
[ENA]
¡û
>W2012445848
WURB01000003
Alphaproteobacteria
Microvirga makkahensis KCTC 23863 [WURB]
360207
360281
+
Asn
GTT
[ENA]
¡û
>W2110031339
BMMF01000002
Alphaproteobacteria
Salinarimonas ramus CGMCC 1.9161 [BMMF]
190377
190451
+
Asn
GTT
[ENA]
¡û
>W2110283074
JACXAB010000008
Alphaproteobacteria
Microvirga sp. BT688 [JACXAB]
83786
83860
+
Asn
GTT
[ENA]
¡û
>W2110372412
JADQDN010000001
Alphaproteobacteria
Microvirga sp. BT290 [JADQDN]
687447
687373
-
Asn
GTT
[ENA]
¡û
>W2110372475
JADQDO010000005
Alphaproteobacteria
Microvirga sp. BT350 [JADQDO]
137045
137119
+
Asn
GTT
[ENA]
¡û
>W2110427291
JAELXT010000004
Alphaproteobacteria
Microvirga sp. BT325 [JAELXT]
247505
247431
-
Asn
GTT
[ENA]
¡û
>W2110439954
JAEQMY010000001
Alphaproteobacteria
Microvirga aerilata 5420S-16 [JAEQMY]
185325
185399
+
Asn
GTT
[ENA]
¡û
>W2110444868
JAERQD010000008
Alphaproteobacteria
Microvirga zambiensis WSM3693 [JAERQD]
82672
82746
+
Asn
GTT
[ENA]
¡û
>W2110444913
JAERQE010000004
Alphaproteobacteria
Microvirga soli R491 [JAERQE]
271001
271075
+
Asn
GTT
[ENA]
¡û
>W2110462979
JAFBID010000018
Alphaproteobacteria
Microvirga arabica SV2184P [JAFBID]
61696
61770
+
Asn
GTT
[ENA]
¡û
>W2110484122
JAFEMB010000002
Alphaproteobacteria
Microvirga sp. BT291 [JAFEMB]
99531
99605
+
Asn
GTT
[ENA]
¡û
>W2110484205
JAFEMD010000004
Alphaproteobacteria
Microvirga sp. BT689 [JAFEMD]
92274
92348
+
Asn
GTT
[ENA]
¡û
>W2110494787
JAFFQX010000020
Alphaproteobacteria
Roseococcus suduntuyensis SHET [JAFFQX]
350793
350719
-
Asn
GTT
[ENA]
¡û
>W2110522918
JAGEML010000002
Alphaproteobacteria
Microvirga sp. 3-52 [JAGEML]
198809
198883
+
Asn
GTT
[ENA]
¡û
>W2110522998
JAGEMM010000001
Alphaproteobacteria
Microvirga sp. 3D7 [JAGEMM]
275763
275837
+
Asn
GTT
[ENA]
¡û
>W2110563303
JAGPUP010000561
Alphaproteobacteria
Microvirga sp. HBU67558 [JAGPUP]
3504
3430
-
Asn
GTT
[ENA]
¡û
>W2110584218
JAHAMK010000002
Alphaproteobacteria
Microvirga sp. 3-52 [JAHAMK]
198912
198986
+
Asn
GTT
[ENA]
¡û
>W2110591813
JAHCDA010000002
Alphaproteobacteria
Roseococcus sp. XZZS9 [JAHCDA]
637770
637844
+
Asn
GTT
[ENA]
¡û
>W2110592171
JAHCDM010000013
Alphaproteobacteria
Roseococcus sp. SDR [JAHCDM]
18074
18000
-
Asn
GTT
[ENA]
¡û
>W2110639942
JAHRCU010000013
Alphaproteobacteria
Roseococcus sp. SDR [JAHRCU]
18074
18000
-
Asn
GTT
[ENA]
¡û
>W2110695600
JAIRBM010000007
Alphaproteobacteria
Microvirga sp. WGZ8 [JAIRBM]
70830
70756
-
Asn
GTT
[ENA]
¡û
>C211152094
CP061718
Alphaproteobacteria
Roseococcus sp. NIBR12 [CP061718]
991897
991971
+
Asn
GTT
-
¡û
>C211259081
CP069354
Alphaproteobacteria
Microvirga sp. VF16 [CP069354]
2657705
2657631
-
Asn
GTT
-
¡û
>W2110718252
JAJBBR010000010
Alphaproteobacteria
Microvirga sp. SM9 [JAJBBR]
71358
71284
-
Asn
GTT
[ENA]
¡û
>W2110736633
JAJDOP010000003
Alphaproteobacteria
Microvirga rosea CGMCC1.16488 [JAJDOP]
602733
602807
+
Asn
GTT
[ENA]
¡û
>C231459549
CP102845
Alphaproteobacteria
Microvirga sp. R24 [CP102845]
2528147
2528073
-
Asn
GTT
-
¡û
>C241096437
CP045423
Alphaproteobacteria
Microvirga thermotolerans HR1 [CP045423]
2349307
2349381
+
Asn
GTT
-
¡û
>C241358882
CP141048
Alphaproteobacteria
Microvirga lotononidis HAMBI_3237 [CP141048]
4023811
4023737
-
Asn
GTT
-
¡û
>W1511624257
LCYG01000019
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
31597
31671
+
Asn
GTT
[ENA]
¡û
>W121068051
AJUA01000081
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
11060
10986
-
Asn
GTT
[ENA]
¡û
>WENV071014
AACY023831806
Marine microbial communities from Global Ocean Sampling (GOS)
288
212
-
Asn
GTT
[ENA]
>W1710507587
FMVJ01000014
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
37965
37891
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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