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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.734899 (73 seq.)
>W1711221593
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138811
138737
-
His
GTG
[ENA]
¡û
>W1711434588
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
714312
714386
+
His
GTG
[ENA]
¡û
>W131095839
AOPO01000002
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
540555
540629
+
His
GTG
[ENA]
¡û
>W141252200
CBRE010000113
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
23222
23148
-
His
GTG
[ENA]
¡û
>WENV182548727
OJBX01000042
[OJBX] seawater metagenome; Sea water
35378
35452
+
His
GTG
[ENA]
¡û
>WENV182552627
OJCM01002705
[OJCM] seawater metagenome; Sea water
366
440
+
His
GTG
[ENA]
¡û
>WENV182568583
OJEV01010024
[OJEV] seawater metagenome; Sea water
213
139
-
His
GTG
[ENA]
¡û
>WENV182572674
OJFM01001222
[OJFM] seawater metagenome; Sea water
4062
4136
+
His
GTG
[ENA]
¡û
>WENV182576509
OJFX01043275
[OJFX] seawater metagenome; Sea water
234
160
-
His
GTG
[ENA]
¡û
>WENV182585297
OJHH01006744
[OJHH] seawater metagenome; Sea water
1158
1084
-
His
GTG
[ENA]
¡û
>WENV182588621
OJHV01003428
[OJHV] seawater metagenome; Sea water
255
181
-
His
GTG
[ENA]
¡û
>WENV182591139
OJIL01000021
[OJIL] seawater metagenome; Sea water
262
188
-
His
GTG
[ENA]
¡û
>WENV182591407
OJIO01000024
[OJIO] seawater metagenome; Sea water
35378
35452
+
His
GTG
[ENA]
¡û
>WENV182593250
OJIT01013409
[OJIT] seawater metagenome; Sea water
507
433
-
His
GTG
[ENA]
¡û
>W141275873
JADJ01000001
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
237189
237115
-
His
GTG
[ENA]
¡û
>WENV170014256
AXCI01003332
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
11112
11186
+
His
GTG
[ENA]
¡û
>WENV170112409
CEGE01005781
[CEGE] microbial mat metagenome; grass silage
186
112
-
His
GTG
[ENA]
¡û
>WENV170112539
CEGF01002690
[CEGF] microbial mat metagenome; grass silage
2281
2207
-
His
GTG
[ENA]
¡û
>WENV170675585
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
66037
65963
-
His
GTG
[ENA]
¡û
>WENV170692506
LGOV01010986
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
83206
83132
-
His
GTG
[ENA]
¡û
>C191165484
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
4428938
4428864
-
His
GTG
-
¡û
>W141564637
JIAY01000002
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
723787
723861
+
His
GTG
[ENA]
¡û
>W141754442
JNVS01000014
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
109320
109246
-
His
GTG
[ENA]
¡û
>W141818885
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
1891781
1891855
+
His
GTG
[ENA]
¡û
>W1910006961
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
22956
22882
-
His
GTG
[ENA]
¡û
>W1911148551
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241292
241366
+
His
GTG
[ENA]
¡û
>W1810156505
PJBI01000054
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
236374
236300
-
His
GTG
[ENA]
¡û
>W1810157217
PJBT01000185
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
163668
163742
+
His
GTG
[ENA]
¡û
>W1810722032
QNTU01000001
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
139466
139392
-
His
GTG
[ENA]
¡û
>C151075883
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
2432929
2432855
-
His
GTG
[Ensembl]
¡û
>C151104174
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2732215
2732141
-
His
GTG
-
¡û
>W2010075319
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
22956
22882
-
His
GTG
[ENA]
¡û
>W2010103594
BJXV01000002
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
189111
189185
+
His
GTG
[ENA]
¡û
>W2010311121
CABWMN010000028
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
502569
502643
+
His
GTG
[ENA]
¡û
>W2010311150
CABWMO010000007
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
173043
173117
+
His
GTG
[ENA]
¡û
>W2010640502
JABWCV010000002
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
37888
37962
+
His
GTG
[ENA]
¡û
>W2010643341
JABWTB010000002
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
607420
607494
+
His
GTG
[ENA]
¡û
>W2010673384
JACCDE010000003
Gammaproteobacteria
Halomonas glaciei DD39 [JACCDE]
100153
100079
-
His
GTG
[ENA]
¡û
>W2010676018
JACCGK010000011
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
122087
122013
-
His
GTG
[ENA]
¡û
>W2011021482
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241292
241366
+
His
GTG
[ENA]
¡û
>W2011657155
SOCZ01000012
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
112404
112330
-
His
GTG
[ENA]
¡û
>W2011978540
VCQL01000016
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
80829
80903
+
His
GTG
[ENA]
¡û
>W2012094244
VNFE01000004
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
389315
389389
+
His
GTG
[ENA]
¡û
>W2012352324
WJPH01000004
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
366023
366097
+
His
GTG
[ENA]
¡û
>W2110098327
CAJFDU010000026
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
965959
966033
+
His
GTG
[ENA]
¡û
>W2110098446
CAJFDW010000025
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
965889
965963
+
His
GTG
[ENA]
¡û
>W2110098556
CAJFDZ010000005
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
217920
217846
-
His
GTG
[ENA]
¡û
>W2110098738
CAJFEC010000030
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
192130
192204
+
His
GTG
[ENA]
¡û
>W2110177018
JABFAT010000013
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
227115
227041
-
His
GTG
[ENA]
¡û
>W2110220284
JACIVL010000016
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
2268
2342
+
His
GTG
[ENA]
¡û
>W2110546353
JAGGRM010000002
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
204854
204780
-
His
GTG
[ENA]
¡û
>W2110546441
JAGGRN010000014
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
138811
138737
-
His
GTG
[ENA]
¡û
>W2110546495
JAGGRO010000015
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
128490
128564
+
His
GTG
[ENA]
¡û
>W2110546563
JAGGRP010000108
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
10202
10276
+
His
GTG
[ENA]
¡û
>W2110577289
JAGWDL010000004
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
268105
268179
+
His
GTG
[ENA]
¡û
>C201087757
CP040451
Gammaproteobacteria
Halomonas sp. PA16-9 [CP040451]
2536635
2536709
+
His
GTG
-
¡û
>C211119370
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
3698554
3698480
-
His
GTG
-
¡û
>C231136195
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
221635
221561
-
His
GTG
-
¡û
>C231226788
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
2479426
2479500
+
His
GTG
-
¡û
>C231534344
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
2335119
2335193
+
His
GTG
-
¡û
>W2110776085
VOGA01000007
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
113649
113723
+
His
GTG
[ENA]
¡û
>C231649485
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2013166
2013240
+
His
GTG
-
¡û
>W2130009101
CAJSTI010002332
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
75
+
His
GTG
[ENA]
¡û
>C241167486
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
1332523
1332597
+
His
GTG
-
¡û
>C241295114
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
1997932
1998006
+
His
GTG
-
¡û
>W1511479196
JWHY01000004
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
435126
435200
+
His
GTG
[ENA]
¡û
>W11180595
AGIB01000045
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
141556
141482
-
His
GTG
[ENA]
¡û
>W121016478
AGQZ01000065
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
49319
49393
+
His
GTG
[ENA]
¡û
>W1610612217
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
66037
65963
-
His
GTG
[ENA]
¡û
>W1611006062
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138811
138737
-
His
GTG
[ENA]
¡û
>W1710518731
FNEF01000007
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
167850
167924
+
His
GTG
[ENA]
¡û
>W1710628367
JPUA01000037
Gammaproteobacteria
Halomonas campaniensis [JPUA]
133753
133679
-
His
GTG
[ENA]
¡û
>W1710733723
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
66037
65963
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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